Registry of Standard Biological Models/Basic Component Models/BioBrick Environment

BioBrick Environment Architecture

Description: BioBrick environment model to define time and units used in simulations Hypothesis: n/a Inputs: none Outputs: time Characteristic parameters: Unit: zero order reaction Unit: first order reaction Unit: second order reaction Unit: molarity Unit: ...

Environment Brick Architecture

CellML structure (CellML 1.1 spec)

• Component: PromoterRBSCoupled
• Units:
  • TBD
• Variables:
  • time
• MathML
  • none

Examples

BioBricks from Registry	CellML file
not applicable	Media:BioBrick_Environment_Model.xml
not applicable	other environment

Comments

• This component is used to promote consistency in the use of units across all the other components (import mechanism)
• This component defines the time in our simulations.