Registry of Standard Biological Models/Basic Component Models/Constitutive Promoter: Difference between revisions

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==ID: Constitutive Promoter==
==Constitutive Promoter Architecture==


{| border="1"
|
*'''Description''': Promoter with constant transcription rate at a given number of gene copies
*'''Description''': Promoter with constant transcription rate at a given number of gene copies
*'''Hypothesis''':  
*'''Hypothesis''':  
**Constant and continuous transcription rate
**Constant and continuous transcription rate
**Transcription rate depends on number of gene copies
**Transcription rate depends on the number of gene copies
**unlimited resources for transcription (excess in polymerase ...)
**unlimited resources for transcription (excess in polymerase ...)
**No effect from activators or repressors
**No effect from activators or repressors
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**nb-gene-copies
**nb-gene-copies
*'''Outputs''':
*'''Outputs''':
**PoPs
**PoPs_out
*'''Internal parameters''':
*'''Characteristic parameters''':
**transcription-rate (per gene copy)
**transcription-rate-per-gene
| align= "center" | [[Image:VBB_ConstitutivePromoter.png|thumb|left|400px|Constitutive Promoter Brick Architecture]]
|}


==CellML structure (CellML 1.1 spec)==
==CellML structure (CellML 1.1 spec)==

Revision as of 08:15, 9 September 2006

Constitutive Promoter Architecture

  • Description: Promoter with constant transcription rate at a given number of gene copies
  • Hypothesis:
    • Constant and continuous transcription rate
    • Transcription rate depends on the number of gene copies
    • unlimited resources for transcription (excess in polymerase ...)
    • No effect from activators or repressors
  • Inputs:
    • nb-gene-copies
  • Outputs:
    • PoPs_out
  • Characteristic parameters:
    • transcription-rate-per-gene
Constitutive Promoter Brick Architecture

CellML structure (CellML 1.1 spec)

  • Component: ConstitutivePromoter
  • Units:
    • TBD
  • Variables:
    • nb-gene-copies (public interface = in / init value = 1.0)
    • transcription-rate (public interface = none / init value = XXX)
    • PoPs-OUT (public interface = out / init value = 0.)
  • MathML
    • <amsmath>PoPs-OUT = transcription-rate*nb-genes-copies</amsmath>


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