Registry of Standard Biological Models/Basic Component Models/Constitutive mRNA Protein Expression Dynamic: Difference between revisions

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*'''Component''': Constitutive_mRNA/ProteinExpression
*'''Component''': Constitutive_mRNA/ProteinExpression
*'''Units''':  
*'''Units''':  
**TBD
**Already defined in sub-components
*'''Imports''':
*'''Imports''':
**Components:
**Components:
***ConstitutivePromoter
***ConstitutivePromoterRBS
***mRNA
***RBS
***Protein
***Protein


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**time (public interface = in)
**time (public interface = in)
**nbGeneCopies (public interface = in)
**nbGeneCopies (public interface = in)
**mRNA (public interface = out / init value = 0.)
**protein (public interface = out / init value = 0.)
**protein (public interface = out / init value = 0.)
*'''MathML'''
*'''MathML'''

Latest revision as of 11:11, 9 September 2006

ID: Constitutive mRNA/Protein expression

  • Description: Constitutive mRNA/Protein expression
  • Hypothesis:
    • central dogma: gene -> mRNA -> protein
    • all hypothesis applicable to sub-parts
  • Inputs:
    • nb-gene-copies
    • time
  • Outputs:
    • [Protein]
  • Characteristic parameters:
    • none
Protein Generator Architecture

CellML structure (CellML 1.1 spec)

  • Component: Constitutive_mRNA/ProteinExpression
  • Units:
    • Already defined in sub-components
  • Imports:
    • Components:
      • ConstitutivePromoterRBS
      • Protein
  • Variables:
    • time (public interface = in)
    • nbGeneCopies (public interface = in)
    • protein (public interface = out / init value = 0.)
  • MathML
    • none

Comments

  • Not too sure how to connect the components together following their import
  • Do I have to declare all the variables I need to use from the imported components ?
  • How do I 'trigger' the dynamic behaviour of the sub-components ?