Registry of Standard Biological Models/Basic Component Models/Constitutive mRNA Protein Expression Dynamic

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Revision as of 14:11, 9 September 2006 by Vincent Rouilly (Talk | contribs)
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ID: Constitutive mRNA/Protein expression

  • Description: Constitutive mRNA/Protein expression
  • Hypothesis:
    • central dogma: gene -> mRNA -> protein
    • all hypothesis applicable to sub-parts
  • Inputs:
    • nb-gene-copies
    • time
  • Outputs:
    • [Protein]
  • Characteristic parameters:
    • none
Protein Generator Architecture
Protein Generator Architecture

CellML structure (CellML 1.1 spec)

  • Component: Constitutive_mRNA/ProteinExpression
  • Units:
    • Already defined in sub-components
  • Imports:
    • Components:
      • ConstitutivePromoterRBS
      • Protein
  • Variables:
    • time (public interface = in)
    • nbGeneCopies (public interface = in)
    • protein (public interface = out / init value = 0.)
  • MathML
    • none

Comments

  • Not too sure how to connect the components together following their import
  • Do I have to declare all the variables I need to use from the imported components ?
  • How do I 'trigger' the dynamic behaviour of the sub-components ?
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