Registry of Standard Biological Models/Model Catalog

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Current revision (10:20, 26 September 2007) (view source)
 
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=Virtual BioBrick Model Catalog=
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=Standard Biological Models Catalog=
__NOTOC__
__NOTOC__
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==Regulators models==
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==Regulator models==
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{| style="width:90%; height:100px" border="1" align="center"
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{| {{Table}} align="center" width="705px"
! Type !! Description !! DNA part  !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part  !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]]
|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]]
!TetR
!TetR
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|<bbpart>Bba_J13211</bbpart>
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|<bbpart>J13211</bbpart>
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_J13211_Model|link]]
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_J13211_Model|link]]
![[Media:CellML_J13211.cml|link]]
![[Media:CellML_J13211.cml|link]]
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!NO
!NO
|
|
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|-
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|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]]
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!constitutive LuxR + pLuxR
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|<bbpart>F2620</bbpart>
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![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_F2620_Model|link]]
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![[Media:CellML_F2620.cml|link]]
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!NO
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!YES
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|tested in MC4100(M9) and DH5a(LB)
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|-
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|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]]
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!LuxR under pLuxR control
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|<bbpart>J37016</bbpart>
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![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_J37016_Model|link]]
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![[Media:CellML_J37016.cml|link]]
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!NO
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!YES
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|tested in DH5a(LB)
|-
|-
|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]]
|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]]
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|<bbpart>other</bbpart>
|<bbpart>other</bbpart>
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]]
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]]
-
![[Media:CellML_J13211.cml|link]]
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![[Media:CellML_?????.cml|link]]
!NO
!NO
!NO
!NO
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|}
|}
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==Protein coding region models==
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{| {{Table}} align="center" width="705px"
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==Coding Proteins models==
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-
 
+
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{| style="width:90%; height:100px" border="1" align="center"
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! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
|[[Image:VBB_CodingProtein_Icon.png|center|30px|Virtual BioBrick Protein]]
|[[Image:VBB_CodingProtein_Icon.png|center|30px|Virtual BioBrick Protein]]
!GFP
!GFP
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|<bbpart>Bba_E0040</bbpart>
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|<bbpart>E0040</bbpart>
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
![[Media:CellML_J13211.cml|link]]
![[Media:CellML_J13211.cml|link]]
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==Inverters models==
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==Inverter models==
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{| style="width:90%; height:100px" border="1" align="center"
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{| {{Table}} align="center" width="705px"
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]]
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]]
!LacI based
!LacI based
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|<bbpart>Bba_E0040</bbpart>
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|<bbpart>Q04121</bbpart>
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![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
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![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_Q04121_Model|link]]
-
![[Media:CellML_J13211.cml|link]]
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![[Media:CellML_Q04121.cml|link]]
 +
!NO
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!NO
 +
|
 +
|-
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|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]]
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!TetR based
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|<bbpart>Q04400</bbpart>
 +
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_Q04400_Model|link]]
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![[Media:CellML_Q04400.cml|link]]
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!NO
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!NO
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|
 +
|-
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|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]]
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! cI based
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|<bbpart>Q04510</bbpart>
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![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_Q04510_Model|link]]
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![[Media:CellML_Q04510.cml|link]]
!NO
!NO
!NO
!NO
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!NO
!NO
|
|
-
|}
 
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|}
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==Assemblies models==
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==Composite part models==
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{| style="width:90%; height:100px" border="1" align="center"
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{| {{table}}  align="center" width="705px"
! Type !! Description !! DNA part !!  ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part !!  ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Protein]]
|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Protein]]
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!GFP
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!Ring Oscillator
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|<bbpart>Bba_E0040</bbpart>
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|<bbpart>I5610</bbpart>
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![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
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![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_I5610_Model|link]]
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![[Media:CellML_J13211.cml|link]]
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![[Media:CellML_I5610.cml|link]]
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!NO
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!NO
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|
 +
|-
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|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Inverter]]
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! Band Detector
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|<bbpart>I20100</bbpart>
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![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_20100_Model|link]]
 +
![[Media:CellML_J20100.cml|link]]
 +
!NO
!NO
!NO
-
!YES
 
|
|
|-
|-

Current revision

Standard Biological Models Catalog

Regulator models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Regulator
TetR <bbpart>J13211</bbpart> link link NO NO
Virtual BioBrick Regulator
constitutive LuxR + pLuxR <bbpart>F2620</bbpart> link link NO YES tested in MC4100(M9) and DH5a(LB)
Virtual BioBrick Regulator
LuxR under pLuxR control <bbpart>J37016</bbpart> link link NO YES tested in DH5a(LB)
Virtual BioBrick Regulator
TBD <bbpart>other</bbpart> link link NO NO

Protein coding region models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
GFP <bbpart>E0040</bbpart> link link NO YES
Virtual BioBrick Environment
TBD <bbpart>other</bbpart> link link NO NO


Inverter models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
LacI based <bbpart>Q04121</bbpart> link link NO NO
Virtual BioBrick Protein
TetR based <bbpart>Q04400</bbpart> link link NO NO
Virtual BioBrick Protein
cI based <bbpart>Q04510</bbpart> link link NO NO
Virtual BioBrick Inverter
TBD <bbpart>other</bbpart> link link NO NO

Composite part models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
Ring Oscillator <bbpart>I5610</bbpart> link link NO NO
Virtual BioBrick Inverter
Band Detector <bbpart>I20100</bbpart> link link NO NO
Virtual BioBrick Inverter
TBD <bbpart>other</bbpart> link link NO NO
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