Registry of Standard Biological Models/Model Catalog
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< Registry of Standard Biological Models(Difference between revisions)
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Current revision (10:20, 26 September 2007) (view source) |
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| - | = | + | =Standard Biological Models Catalog= |
__NOTOC__ | __NOTOC__ | ||
| - | == | + | ==Regulator models== |
| - | {| | + | {| {{Table}} align="center" width="705px" |
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments | ! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments | ||
|- | |- | ||
| Line 15: | Line 15: | ||
!NO | !NO | ||
| | | | ||
| + | |- | ||
| + | |[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]] | ||
| + | !constitutive LuxR + pLuxR | ||
| + | |<bbpart>F2620</bbpart> | ||
| + | ![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_F2620_Model|link]] | ||
| + | ![[Media:CellML_F2620.cml|link]] | ||
| + | !NO | ||
| + | !YES | ||
| + | |tested in MC4100(M9) and DH5a(LB) | ||
| + | |- | ||
| + | |[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]] | ||
| + | !LuxR under pLuxR control | ||
| + | |<bbpart>J37016</bbpart> | ||
| + | ![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_J37016_Model|link]] | ||
| + | ![[Media:CellML_J37016.cml|link]] | ||
| + | !NO | ||
| + | !YES | ||
| + | |tested in DH5a(LB) | ||
|- | |- | ||
|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]] | |[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]] | ||
| Line 20: | Line 38: | ||
|<bbpart>other</bbpart> | |<bbpart>other</bbpart> | ||
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]] | ![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]] | ||
| - | ![[Media: | + | ![[Media:CellML_?????.cml|link]] |
!NO | !NO | ||
!NO | !NO | ||
| Line 26: | Line 44: | ||
|} | |} | ||
| + | ==Protein coding region models== | ||
| - | + | {| {{Table}} align="center" width="705px" | |
| - | + | ||
| - | + | ||
| - | {| | + | |
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments | ! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments | ||
|- | |- | ||
| Line 53: | Line 69: | ||
| - | == | + | ==Inverter models== |
| - | {| | + | {| {{Table}} align="center" width="705px" |
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments | ! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments | ||
|- | |- | ||
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]] | |[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]] | ||
!LacI based | !LacI based | ||
| - | |<bbpart> | + | |<bbpart>Q04121</bbpart> |
| - | ![[Registry_of_Standard_Biological_Models/Model_Catalog/ | + | ![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_Q04121_Model|link]] |
| - | ![[Media: | + | ![[Media:CellML_Q04121.cml|link]] |
| + | !NO | ||
| + | !NO | ||
| + | | | ||
| + | |- | ||
| + | |[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]] | ||
| + | !TetR based | ||
| + | |<bbpart>Q04400</bbpart> | ||
| + | ![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_Q04400_Model|link]] | ||
| + | ![[Media:CellML_Q04400.cml|link]] | ||
| + | !NO | ||
| + | !NO | ||
| + | | | ||
| + | |- | ||
| + | |[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]] | ||
| + | ! cI based | ||
| + | |<bbpart>Q04510</bbpart> | ||
| + | ![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_Q04510_Model|link]] | ||
| + | ![[Media:CellML_Q04510.cml|link]] | ||
!NO | !NO | ||
!NO | !NO | ||
| Line 75: | Line 109: | ||
!NO | !NO | ||
| | | | ||
| - | |||
| + | |} | ||
| - | == | + | ==Composite part models== |
| - | {| | + | {| {{table}} align="center" width="705px" |
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments | ! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments | ||
|- | |- | ||
|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Protein]] | |[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Protein]] | ||
| - | ! | + | !Ring Oscillator |
| - | |<bbpart> | + | |<bbpart>I5610</bbpart> |
| - | ![[Registry_of_Standard_Biological_Models/Model_Catalog/ | + | ![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_I5610_Model|link]] |
| - | ![[Media: | + | ![[Media:CellML_I5610.cml|link]] |
| + | !NO | ||
| + | !NO | ||
| + | | | ||
| + | |- | ||
| + | |[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Inverter]] | ||
| + | ! Band Detector | ||
| + | |<bbpart>I20100</bbpart> | ||
| + | ![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_20100_Model|link]] | ||
| + | ![[Media:CellML_J20100.cml|link]] | ||
| + | !NO | ||
!NO | !NO | ||
| - | |||
| | | | ||
|- | |- | ||
Current revision
Standard Biological Models Catalog
Regulator models
| Type | Description | DNA part | ID Card | CellML File | CellML Validated | Experimentally Characterized | Comments |
|---|---|---|---|---|---|---|---|
 | TetR | <bbpart>J13211</bbpart> | link | link | NO | NO | |
| constitutive LuxR + pLuxR | <bbpart>F2620</bbpart> | link | link | NO | YES | tested in MC4100(M9) and DH5a(LB) |
| LuxR under pLuxR control | <bbpart>J37016</bbpart> | link | link | NO | YES | tested in DH5a(LB) |
| TBD | <bbpart>other</bbpart> | link | link | NO | NO |
Protein coding region models
| Type | Description | DNA part | ID Card | CellML File | CellML Validated | Experimentally Characterized | Comments |
|---|---|---|---|---|---|---|---|
 | GFP | <bbpart>E0040</bbpart> | link | link | NO | YES | |
| TBD | <bbpart>other</bbpart> | link | link | NO | NO |
Inverter models
| Type | Description | DNA part | ID Card | CellML File | CellML Validated | Experimentally Characterized | Comments |
|---|---|---|---|---|---|---|---|
 | LacI based | <bbpart>Q04121</bbpart> | link | link | NO | NO | |
| TetR based | <bbpart>Q04400</bbpart> | link | link | NO | NO | |
| cI based | <bbpart>Q04510</bbpart> | link | link | NO | NO | |
| TBD | <bbpart>other</bbpart> | link | link | NO | NO |
Composite part models
| Type | Description | DNA part | ID Card | CellML File | CellML Validated | Experimentally Characterized | Comments |
|---|---|---|---|---|---|---|---|
 | Ring Oscillator | <bbpart>I5610</bbpart> | link | link | NO | NO | |
| Band Detector | <bbpart>I20100</bbpart> | link | link | NO | NO | |
| TBD | <bbpart>other</bbpart> | link | link | NO | NO |
