Registry of Standard Biological Models/Model Catalog: Difference between revisions

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=Virtual BioBrick Model Catalog=
=Standard Biological Models Catalog=
__NOTOC__
__NOTOC__


==Regulators models==
==Regulator models==


{| style="width:90%; height:100px" border="1" align="center"
{| {{Table}} align="center" width="705px"
! Type !! Description !! DNA part  !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part  !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
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|}
|}


==Coding Proteins models==
==Protein coding region models==


{| style="width:90%; height:100px" border="1" align="center"
{| {{Table}} align="center" width="705px"
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
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==Inverters models==
==Inverter models==


{| style="width:90%; height:100px" border="1" align="center"
{| {{Table}} align="center" width="705px"
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]]
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]]
!LacI based
!LacI based
|<bbpart>Bba_E0040</bbpart>
|<bbpart>Q04121</bbpart>
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_Q04121_Model|link]]
![[Media:CellML_J13211.cml|link]]
![[Media:CellML_Q04121.cml|link]]
!NO
!NO
|
|-
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]]
!TetR based
|<bbpart>Q04400</bbpart>
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_Q04400_Model|link]]
![[Media:CellML_Q04400.cml|link]]
!NO
!NO
|
|-
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]]
! cI based
|<bbpart>Q04510</bbpart>
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_Q04510_Model|link]]
![[Media:CellML_Q04510.cml|link]]
!NO
!NO
!NO
!NO
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!NO
!NO
|
|
|}
|}


==Composite part models==


==Assemblies models==
{| {{table}}  align="center" width="705px"
 
{| style="width:90%; height:100px" border="1" align="center"
! Type !! Description !! DNA part !!  ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part !!  ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Protein]]
|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Protein]]
!GFP
!Ring Oscillator
|<bbpart>Bba_E0040</bbpart>
|<bbpart>I5610</bbpart>
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_I5610_Model|link]]
![[Media:CellML_J13211.cml|link]]
![[Media:CellML_I5610.cml|link]]
!NO
!NO
|
|-
|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Inverter]]
! Band Detector
|<bbpart>I20100</bbpart>
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_20100_Model|link]]
![[Media:CellML_J20100.cml|link]]
!NO
!NO
!NO
!YES
|
|
|-
|-

Latest revision as of 07:20, 26 September 2007

Standard Biological Models Catalog

Regulator models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Regulator
Virtual BioBrick Regulator
 TetR <bbpart>J13211</bbpart> link link NO NO
Virtual BioBrick Regulator
Virtual BioBrick Regulator
 constitutive LuxR + pLuxR <bbpart>F2620</bbpart> link link NO YES tested in MC4100(M9) and DH5a(LB)
Virtual BioBrick Regulator
Virtual BioBrick Regulator
 LuxR under pLuxR control <bbpart>J37016</bbpart> link link NO YES tested in DH5a(LB)
Virtual BioBrick Regulator
Virtual BioBrick Regulator
 TBD <bbpart>other</bbpart> link link NO NO

Protein coding region models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
Virtual BioBrick Protein
 GFP <bbpart>E0040</bbpart> link link NO YES
Virtual BioBrick Environment
Virtual BioBrick Environment
 TBD <bbpart>other</bbpart> link link NO NO


Inverter models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
Virtual BioBrick Protein
 LacI based <bbpart>Q04121</bbpart> link link NO NO
Virtual BioBrick Protein
Virtual BioBrick Protein
 TetR based <bbpart>Q04400</bbpart> link link NO NO
Virtual BioBrick Protein
Virtual BioBrick Protein
 cI based <bbpart>Q04510</bbpart> link link NO NO
Virtual BioBrick Inverter
Virtual BioBrick Inverter
 TBD <bbpart>other</bbpart> link link NO NO

Composite part models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
Virtual BioBrick Protein
 Ring Oscillator <bbpart>I5610</bbpart> link link NO NO
Virtual BioBrick Inverter
Virtual BioBrick Inverter
 Band Detector <bbpart>I20100</bbpart> link link NO NO
Virtual BioBrick Inverter
Virtual BioBrick Inverter
 TBD <bbpart>other</bbpart> link link NO NO
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