Registry of Standard Biological Models/Model Catalog

From OpenWetWare

< Registry of Standard Biological Models(Difference between revisions)
Jump to: navigation, search
(→Assemblies models)
Current revision (10:20, 26 September 2007) (view source)
 
Line 1: Line 1:
-
=Virtual BioBrick Model Catalog=
+
=Standard Biological Models Catalog=
__NOTOC__
__NOTOC__
-
==Regulators models==
+
==Regulator models==
-
{| style="width:90%; height:100px" border="1" align="center"
+
{| {{Table}} align="center" width="705px"
! Type !! Description !! DNA part  !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part  !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
Line 44: Line 44:
|}
|}
-
==Coding Proteins models==
+
==Protein coding region models==
-
{| style="width:90%; height:100px" border="1" align="center"
+
{| {{Table}} align="center" width="705px"
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
Line 69: Line 69:
-
==Inverters models==
+
==Inverter models==
-
{| style="width:90%; height:100px" border="1" align="center"
+
{| {{Table}} align="center" width="705px"
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-
Line 112: Line 112:
|}
|}
-
==Assemblies models==
+
==Composite part models==
-
{| style="width:90%; height:100px" border="1" align="center"
+
{| {{table}}  align="center" width="705px"
! Type !! Description !! DNA part !!  ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
! Type !! Description !! DNA part !!  ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
|-
|-

Current revision

Standard Biological Models Catalog

Regulator models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Regulator
TetR <bbpart>J13211</bbpart> link link NO NO
Virtual BioBrick Regulator
constitutive LuxR + pLuxR <bbpart>F2620</bbpart> link link NO YES tested in MC4100(M9) and DH5a(LB)
Virtual BioBrick Regulator
LuxR under pLuxR control <bbpart>J37016</bbpart> link link NO YES tested in DH5a(LB)
Virtual BioBrick Regulator
TBD <bbpart>other</bbpart> link link NO NO

Protein coding region models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
GFP <bbpart>E0040</bbpart> link link NO YES
Virtual BioBrick Environment
 TBD <bbpart>other</bbpart> link link NO NO


Inverter models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
LacI based <bbpart>Q04121</bbpart> link link NO NO
Virtual BioBrick Protein
TetR based <bbpart>Q04400</bbpart> link link NO NO
Virtual BioBrick Protein
 cI based <bbpart>Q04510</bbpart> link link NO NO
Virtual BioBrick Inverter
 TBD <bbpart>other</bbpart> link link NO NO

Composite part models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
Ring Oscillator <bbpart>I5610</bbpart> link link NO NO
Virtual BioBrick Inverter
 Band Detector <bbpart>I20100</bbpart> link link NO NO
Virtual BioBrick Inverter
 TBD <bbpart>other</bbpart> link link NO NO
Retrieved from "http://www.openwetware.org/wiki/Registry_of_Standard_Biological_Models/Model_Catalog"
Personal tools