Richard Lab:protocols
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==YSI Analyzer== | ==YSI Analyzer== | ||
::'''[[YSI 2700 Select Biochemistry Analyzer|Overview]] | ::'''[[YSI 2700 Select Biochemistry Analyzer|Overview]] | ||
| + | ::'''[[Quantification of glucose]] | ||
<center> | <center> | ||
| + | |||
=Methods= | =Methods= | ||
</center> | </center> | ||
| Line 29: | Line 31: | ||
::'''[[Quantification of glucose|Quantification of Glucose]]''' | ::'''[[Quantification of glucose|Quantification of Glucose]]''' | ||
::'''[[Richard Lab:SSCF|Simultaneous Saccharification and Co-Fermentation (SSCF)]]''' | ::'''[[Richard Lab:SSCF|Simultaneous Saccharification and Co-Fermentation (SSCF)]]''' | ||
| + | ::'''[[SSF Ethanol production]]''' | ||
| + | ::'''[[Acidification of C and N Samples using Tartic Acid]]''' | ||
==Enzymatic Screens and Assays== | ==Enzymatic Screens and Assays== | ||
| Line 38: | Line 42: | ||
::'''[[Beta-galactosidase Screen]] | ::'''[[Beta-galactosidase Screen]] | ||
::'''[[Beta-glucuronidase protocols|Beta-glucuronidase (GusA) Protocols]]''' | ::'''[[Beta-glucuronidase protocols|Beta-glucuronidase (GusA) Protocols]]''' | ||
| + | ::'''[[Cellulase assays]]''' | ||
==Molecular/Synthetic Biology== | ==Molecular/Synthetic Biology== | ||
| Line 43: | Line 48: | ||
::'''[[Richard Lab:Amplified Insert Assembly|Amplified Insert Assembly]]''' | ::'''[[Richard Lab:Amplified Insert Assembly|Amplified Insert Assembly]]''' | ||
::'''[[Richard Lab:Bio-Brick Formats|Bio-Brick Formats]]''' | ::'''[[Richard Lab:Bio-Brick Formats|Bio-Brick Formats]]''' | ||
| - | ::'''Richard Lab PCR Protocols''' | + | ::'''[[Richard Lab:PCR|PCR Protocols]]''' |
::'''[[Richard Lab:Site Directed Mutagenesis| Site Directed Mutagenesis]]''' | ::'''[[Richard Lab:Site Directed Mutagenesis| Site Directed Mutagenesis]]''' | ||
::'''[[Miniprep/GET_buffer | Plasmid Extraction]]''' | ::'''[[Miniprep/GET_buffer | Plasmid Extraction]]''' | ||
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::'''[[Richard_Lab:Preparing_electrocompetent_cells|Making Electro-competent ''E. coli'']]''' | ::'''[[Richard_Lab:Preparing_electrocompetent_cells|Making Electro-competent ''E. coli'']]''' | ||
::'''[[Richard Lab:Electroporation of E. coli|Electro-transformation of ''E. coli'']]''' | ::'''[[Richard Lab:Electroporation of E. coli|Electro-transformation of ''E. coli'']]''' | ||
| - | ::'''[[ | + | ::'''[[Lactobacillus transformation (Speer 2012)|Electro-transformation of ''L. Plantarum'']]''' |
::'''[[Chromosomal Integration]]''' | ::'''[[Chromosomal Integration]]''' | ||
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==Compost Analysis== | ==Compost Analysis== | ||
| - | |||
::'''[[Chemical Oxygen Demand]]''' | ::'''[[Chemical Oxygen Demand]]''' | ||
| - | + | ::'''[[Compost Pile Monitoring]]''' | |
| + | ::'''[[CO2 Respiration]]''' | ||
| + | ::'''[[Manure and Compost Sampling Preparation Protocols]]''' | ||
| + | ::'''[[Acidification of compost with 0.5 N HCl]]''' | ||
| + | ::'''[[Free Air Space Testing Procedure]]''' | ||
Back to [[Richard_Lab | Richard Lab]] | Back to [[Richard_Lab | Richard Lab]] | ||
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Contents |
Equipment
Dionex IC
Dionex ASE
Anaerobic Chamber
YSI Analyzer
Methods
Biomass Protocols
- Silage Protocols
- Biomass Compositional Analysis
- NDF (Neutral Detergent Fiber) Determination
- ADF (Acid Detergent Fiber) Determination
- ADL (Acid Detergent Lignin) Determination
- Dilute-Acid Pretreatment of Biomass
- Enzymatic Hydrolysis of Biomass
- Quantification of Glucose
- Simultaneous Saccharification and Co-Fermentation (SSCF)
- SSF Ethanol production
- Acidification of C and N Samples using Tartic Acid
Enzymatic Screens and Assays
Molecular/Synthetic Biology
- Amplified Insert Assembly
- Bio-Brick Formats
- PCR Protocols
- Site Directed Mutagenesis
- Plasmid Extraction
- DNA Quantification
- DNA Concentration
- DNA Synthesis
- Restriction Digestion
- Partial Restriction Digest
- Agarose Gel Electrophoresis
- Polyacrylamide Gel Electrophoresis
- Gel Extraction of DNA
- Ligation
- Preparation of Shuttle-vectors for transformation
- Transforming Lactococcus lactis
- Making Electro-competent E. coli
- Electro-transformation of E. coli
- Electro-transformation of L. Plantarum
- Chromosomal Integration
Manure Storage and Emissions Analysis
- Measuring and Analyzing Gas-Flux from a Surface
- Setting Up Biofilters in the Field.
- Formatting Data from Data Logger
- The following is a set of instructions on how to use macros to transform a data set from configuration 1 to configuration 2.
- BOD, moisture and VS content
- Organic matter samples are analyzed according to the following instructions for BOD (Biological Oxygen Demand) and moisture and Volatile Solids (organic matter) content analysis.
Compost Analysis
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