SBB09 seq: Difference between revisions
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__NOTOC__ | __NOTOC__ | ||
==[[Media:SBB09AllSeqs.zip]]== | |||
==== ==== | ==== ==== | ||
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{| class="wikitable" style="background-color:#FFF;color:black"| | {| class="wikitable" style="background-color:#FFF;color:black"| | ||
|- | |- | ||
| sbb076 || Douglas Densmore || 031609 || pBca9495AK M10051 || 1/Plate # || Well # || ca998 || | | sbb076 || Douglas Densmore || 031609 || pBca9495AK M10051 || 1/Plate # || Well # || ca998 || Perfect Partial || [[SBB09sbb/sbb076 | sbb076]] | ||
|- | |- | ||
| sbb077 || Douglas Densmore || 031609 || pBca9495AK M10051 || 2/Plate # || Well # || ca998 || | | sbb077 || Douglas Densmore || 031609 || pBca9495AK M10051 || 2/Plate # || Well # || ca998 || Perfect Partial || [[SBB09sbb/sbb077 | sbb077]] | ||
|- | |- | ||
| sbb078 || Vaibhavi Umesh || 031609 || pBca9495KC-M10014 || 2/Plate #1 || Well # || Oligo || Result || [[SBB09sbb/sbb078 | sbb078]] | | sbb078 || Vaibhavi Umesh || 031609 || pBca9495KC-M10014 || 2/Plate #1 || Well # || Oligo || Result || [[SBB09sbb/sbb078 | sbb078]] | ||
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| sbb081 || || Chris A || 031609 || pBca9495CA-M10031 || 2 || ??? || G00101|| Result || [[SBB09sbb/sbb081 | sbb081]] | | sbb081 || || Chris A || 031609 || pBca9495CA-M10031 || 2 || ??? || G00101|| Result || [[SBB09sbb/sbb081 | sbb081]] | ||
|- | |- | ||
| | | sbb082 || Douglas Densmore || 031809 || pBca9495CA-M10050 || 1 || ??? || ca998 || Result || [[SBB09sbb/sbb082 | sbb082]] | ||
|- | |- | ||
| | | sbb083 || Douglas Densmore || 031809 || pBca9495CA-M10050 || 2 || ??? || ca998 || Result || [[SBB09sbb/sbb083 | sbb083]] | ||
| | |- | ||
| sbb084 || Douglas Densmore || 031809 || pBca9495CA-M10050 || 1 || ??? || g00101 || Result || [[SBB09sbb/sbb084 | sbb084]] | |||
|- | |- | ||
| | | sbb085 || Douglas Densmore || 031809 || pBca9495CA-M10050 || 2 || ??? || g00101 || Result || [[SBB09sbb/sbb085 | sbb085]] | ||
|} | |||
==== ==== | |||
<br> | |||
{| class="wikitable" style="background-color:#FFF;color:black"| | |||
|- | |||
| sbb090 || Dirk van Swaay || 031809 || pBca9495CA-M10022 || 1 || Well# || ca998 || Result || [[SBB09sbb/sbb090 | sbb090]] | |||
|- | |||
| sbb091 || Dirk van Swaay || 031809 || pBca9495CA-M10022 || 2 || Well# || ca998 || Result || [[SBB09sbb/sbb091 | sbb091]] | |||
|- | |||
| sbb092 || Dirk van Swaay || 031809 || pBca9495CA-M10022 || 3 || Well# || ca998 || Result || [[SBB09sbb/sbb092 | sbb092]] | |||
|- | |||
| sbb093 || Dirk van Swaay || 031809 || pBca9495CA-M10022 || 4 || Well# || ca998 || Result || [[SBB09sbb/sbb093 | sbb093]] | |||
|} | |} |
Latest revision as of 20:07, 25 April 2009
Media:SBB09AllSeqs.zip
Read | Name | Date | Plasmid | Clone/Plate # | Well # | Oligo | Result | File |
sbb001 | Jenn Brophy | 030209 | pBca9495KC-M10008 | 1 | A1 | ca998 | Three point mutations. One at 449 (call=T, map=C), 705 (call=A, map=C), and 875 (call=G, map=A). All three point mutations are silent, so the part is okay to use. Renamed M10086 | sbb001 |
sbb002 | Jenn Brophy | 030209 | pBca9495KC-M10011 | 1 | B1 | ca998 | Perfect | sbb002 |
sbb003 | Jenn Brophy | 030209 | pBca9495KC-M10008 | 2 | A1 | ca998 | Result | sbb003 |
sbb004 | Jenn Brophy | 030209 | pBca9495KC-M10011 | 2 | B1 | ca998 | Result | sbb004 |
sbb005 | Vaibhavi Umesh | 030209 | pBca9145-M10012 | 2 | Well # | ca998 | Result | sbb005 |
sbb006 | Vaibhavi Umesh | 030209 | pBca9145-M10013 | 1 | Well # | ca998 | Result | sbb006 |
sbb007 | Vaibhavi Umesh | 030209 | pBca9145-M10013 | 2 | Well # | ca998 | Result | sbb007 |
sbb008 | Simina Ticau | 030209 | pBca9495AK-M10027 | 1 | 1C1 | ca998 | perfect match to M10043 | sbb008 |
sbb009 | Simina Ticau | 030209 | pBca9495AK-M10027 | 2 | 2C1 | ca998 | match to M10043 | sbb009 |
sbb010 | Simina Ticau | 030209 | pBca9495AK-M10043 | 1 | 1D1 | ca998 | perfect | sbb010 |
sbb011 | Simina Ticau | 030209 | pBca9495AK-M10043 | 2 | 2D1 | ca998 | Result | sbb011 |
sbb012 | Susan Chen | 030209 | JCA_pBca9495AK-M10053 | 1 | Well # | ca998 | perfect | sbb012 |
sbb013 | Susan Chen | 030209 | JCA_pBca9495AK-M10053 | 2 | Well # | ca998 | Result | sbb013 |
sbb014 | Nikhil Sharma | 030209 | pBca9495CA-M10032 | 1 | G1 | ca998 | should match Roger's EaeA M10032, but wrong sequence | sbb014 |
sbb015 | Nikhil Sharma | 030209 | pBca9495CA-M10032 | 2 | E1 | ca998 | matches fragment of M10032 | sbb015 |
http://openwetware.org/index.php?title=SBB09_seq&action=edit
sbb016 | Nikhil Sharma | 030209 | pBca9495AK-M10021 | 1 | H1 | ca998 | Bad read; the part did not ligate at all into the vector | sbb016 |
sbb017 | Nikhil Sharma | 030209 | pBca9495AK-M10021 | 2 | F1 | ca998 | Perfect Read | sbb017 |
sbb018 | Warren Lowe | 030409 | pBca9495AK-M10033 | 1 | H2 | ca998 | Perfect Read | sbb018 |
sbb019 | Warren Lowe | 030409 | pBca9495AK-M10033 | 2 | H2 | ca998 | Result | sbb019 |
sbb020 | Sadao Ota | 030409 | pBca9495KC-M10034 | 1/1 | A2 | ca998 | perfect partial to M10035 | sbb020 |
sbb021 | Simina Ticau | 03/04/09 | pBca9495KC-M10026 | 1 | G2 | ca998 | 1bp del in BamHI site | sbb021 |
sbb022 | Simina Ticau | 03/04/09 | pBca9495KC-M10026 | 2 | G2 | ca998 | perfect | sbb022 |
sbb023F | Susan Chen | 03/04/09 | pBca9495KC-M10052 | 1 | B2 | ca998 | JCA note: When requesting two reads, there should be 2 sbb numbers. For this one, I just renamed them "f" and "r" to distinguish them | sbb023 |
sbb023R | Susan Chen | 03/04/09 | pBca9495KC-M10052 | 1 | B2 | g00101 | JCA note: When requesting two reads, there should be 2 sbb numbers. For this one, I just renamed them "f" and "r" to distinguish them. wrong has deletion | sbb023 |
sbb024F | Susan Chen | 03/06/09 | pBca9495KC-M10052 | 2 | B2 | ca998 | perfect partial | sbb024 |
sbb024R | Susan Chen | 03/06/09 | pBca9495KC-M10052 | 2 | B2 | g00101 | Result | sbb024 |
sbb025 | Roger Lowe | 030609 | pBca9495CA-M10020 | 1 | C3 | ca998 | perfect match to M10020 traT | sbb025 |
sbb026 | Sam Ng | 3/6 | pBca9495KC-M10044 | Clone:1/Well:1 | Plate:1/Well:E2 | ca998 | Wrong: 5' deletion | sbb026 |
sbb027 | Sam Ng | 3/6 | pBca9495KC-M10044 | Clone:1/Well:1 | Plate:1/Well:E2 | g00101 | JCA: wrong on sbb026 | sbb027 |
sbb028 | Sam Ng | 3/6 | pBca9495KC-M10044 | Clone:2/Well:1 | Plate:1/Well:F2 | ca998 | Perfect | sbb028 |
sbb029 | Sam Ng | 3/6 | pBca9495KC-M10044 | Clone:2/Well:1 | Plate:1/Well:F2 | g00101 | Perfect | sbb029 |
sbb030 | Roger Lowe | 030609 | pBca9495CA-M10020 | Plate 1 | D3 | g00101 | perfect match to M10020 traT | sbb030 |
sbb031 | Patrick Harrigan | 03/06/09 | pBca9495AK | 1/Plate 1 | G3 | ca998 | Perfect | sbb031 |
sbb032 | Patrick Harrigan | 03/06/09 | pBca9495AK | 2/Plate 2 | G3 | ca998 | Result | sbb032 |
sbb033 | Roger Lowe | 030609 | pBca9495CA-M10020 | Plate 1/ E3 | Well # | ca998 | Result | sbb033 |
sbb034 | Roger Lowe | 030609 | pBca9495CA-M10020 | Plate 1/ F3 | g00101 | Result | sbb034 | |
sbb035 | David de Renzy | 030609 | pBca9495KC | Clone 1/Plate 1 | H3 | ca998 | Many missense and silent point mutations | sbb035 |
sbb036 | David de Renzy | 030609 | pBca9495KC | Clone 1/Plate 1 | H3 | g00101 | Many missense and silent point mutations | sbb036 |
sbb037 | David de Renzy | 030609 | pBca9495KC | Clone 2/Plate 2 | A2 | ca998 | Result | sbb037 |
sbb038 | David de Renzy | 030609 | pBca9495KC | Clone 2/Plate 2 | A2 | g00101 | Result | sbb038 |
sbb039 | Dirk van Swaay | 030909 | pBca9495AK-M10046 | 1 | C4 | ca998 | Perfect | sbb039 |
sbb040 | Name | Date | Plasmid | Clone/Plate # | Well # | Oligo | sbb040 |
sbb041 | didn't use | Sadao Ota | 030609 | pBca9495KC | Clone1/Plate 1 | A4 | ca998 | Result | sbb041 |
sbb042 | didn't use | Sadao Ota | 030609 | pBca9495KC | Clone2/Plate 2 | C2 | g00101 | Result | sbb042 |
sbb043 | didn't use | Sadao Ota | 030609 | pBca9495KC | Clone1/Plate 1 | B4 | ca998 | Result | sbb043 |
sbb044 | JCA | 030609 | beta roll intermediate | 1 | N/A | T7 | crazy wrong | sbb044 | |
sbb045 | JCA | 030609 | beta roll intermediate | 2 | N/A | T7 | crazy wrong | sbb045 |
sbb046 | didn't use | Sadao Ota | 030909 | pBca9495KC | M10034 | Named as KC1 | ca998 | Result | sbb046 |
sbb047 | didn't use | Sadao Ota | 030909 | pBca9495KC | M10034 | Named as KC2 | g00101 | Result | sbb047 |
sbb048 | didn't use | Sadao Ota | 030909 | pBca9495KC | M10035 | Named as KC3 | ca998 | Result | sbb048 |
sbb049 | didn't use | Sadao Ota | 030909 | pBca9495KC | M10035 | Named as KC4 | g00101 | Result | sbb049 |
sbb050 | Hank Shih | 030909 | pBca9495AK | M10025 | Named as HS1 | ca998 | Perfect | sbb050 |
sbb051 | Hank Shih | 030909 | pBca9495AK | M10025 | Named as HS1 | g00101 | Perfect | sbb051 |
sbb052 | Jenn Brophy | 030909 | pBca9495KC-M10063 | 1 | Well # | ca998 | Perfect | sbb052 |
sbb053 | Jenn Brophy | 030909 | pBca9495KC-M10063 | 2 | Well # | ca998 | Result | sbb053 |
sbb054 | Name | Date | Plasmid | Clone/Plate # | Well # | Oligo | Result | sbb054 |
sbb055 | Sadao Ota | 030409 | pBca9495KC-M10035 (originally thought to be M10034) | 1/1 | A2 | G00101 | Result | sbb055 |
sbb056 | Carlos Rivera-Carpio | 030909 | pBca9495CA | M10030 | CR8-1 | ca998 | Result | sbb056 |
sbb057 | Carlos Rivera-Carpio | 030909 | pBca9495CA | M10030 | CR8-1 | g00101 | Result | sbb057 |
sbb058 | Sam Ng | 030909 | pBca9495KC | M10045 | named SN-1 | ca998 | Perfect | sbb058 |
sbb059 | Hank Shih | 030909 | pBca9495AK | M10025 #2 | Named as HS2 | ca998 | Result | sbb059 |
sbb060 | Hank Shih | 030909 | pBca9495AK | M10025 #2 | Named as HS2 | G00101 | Result | sbb060 |
sbb061 | Carlos Rivera-Carpio | 030909 | pBca9495CA | M10030 | CR8-2 | ca998 | Result | sbb061 |
sbb062 | Carlos Rivera-Carpio | 030909 | pBca9495CA | M10030 | CR8-2 | G00101 | Result | sbb062 |
sbb063 | Chris A | 031109 | pBca9495AK-M10023 | 1 | ??? | ca998 | perfect | sbb063 |
sbb064 | Chris A | 031109 | pBca9495CA-M10031 | 1 | ??? | ca998 | 5' perfect | sbb064 |
sbb065 | Chris A | 031109 | pBca9495CA-M10031 | 1 | ??? | G00101 | 3' end deletion, out of frame | sbb065 |
sbb066 | John Wang | 030909 | pBca9495AK-M10018 | 1 | Well # | ca998 | Perfect Match | sbb066 |
sbb067 | John Wang | 030909 | pBca9495AK-M10019 | 1 | Well # | ca998 | Perfect Match | sbb067 |
sbb068 | John Wang | 030909 | pBca9495AK-M10018 | 2 | Well # | ca998 | Result | sbb068 |
sbb069 | John Wang | 030909 | pBca9495AK-M10019 | 2 | Well # | ca998 | Result | sbb069 |
sbb070 | Kamran Ali | 031609 | pBca9495AK-M10047 | 1 | Well # | ca998 | Result | sbb070 |
sbb071 | Kamran Ali | 031609 | pBca9495AK-M10047 | 2 | Well # | ca998 | Result | sbb071 |
sbb072 | Kamran Ali | 031609 | pBca9495AK-M10042 | 1 | Well # | ca998 | Result | sbb072 |
sbb073 | Kamran Ali | 031609 | pBca9495AK-M10042 | 1 | Well # | g00101 | Result | sbb073 |
sbb074 | Kamran Ali | 031609 | pBca9495AK-M10042 | 2 | Well # | ca998 | Result | sbb074 |
sbb075 | Kamran Ali | 031609 | pBca9495AK-M10042 | 2 | Well # | g00101 | Result | sbb075 |
sbb076 | Douglas Densmore | 031609 | pBca9495AK M10051 | 1/Plate # | Well # | ca998 | Perfect Partial | sbb076 | |
sbb077 | Douglas Densmore | 031609 | pBca9495AK M10051 | 2/Plate # | Well # | ca998 | Perfect Partial | sbb077 | |
sbb078 | Vaibhavi Umesh | 031609 | pBca9495KC-M10014 | 2/Plate #1 | Well # | Oligo | Result | sbb078 | |
sbb079 | Vaibhavi Umesh | 031609 | pBca9495KC-M10014 | 2/Plate #2 | Well # | Oligo | Result | sbb079 | |
sbb080 | Chris A | 031609 | pBca9495CA-M10031 | 2 | ??? | ca998 | Result | sbb080 | |
sbb081 | Chris A | 031609 | pBca9495CA-M10031 | 2 | ??? | G00101 | Result | sbb081 | |
sbb082 | Douglas Densmore | 031809 | pBca9495CA-M10050 | 1 | ??? | ca998 | Result | sbb082 | |
sbb083 | Douglas Densmore | 031809 | pBca9495CA-M10050 | 2 | ??? | ca998 | Result | sbb083 | |
sbb084 | Douglas Densmore | 031809 | pBca9495CA-M10050 | 1 | ??? | g00101 | Result | sbb084 | |
sbb085 | Douglas Densmore | 031809 | pBca9495CA-M10050 | 2 | ??? | g00101 | Result | sbb085 |
sbb090 | Dirk van Swaay | 031809 | pBca9495CA-M10022 | 1 | Well# | ca998 | Result | sbb090 |
sbb091 | Dirk van Swaay | 031809 | pBca9495CA-M10022 | 2 | Well# | ca998 | Result | sbb091 |
sbb092 | Dirk van Swaay | 031809 | pBca9495CA-M10022 | 3 | Well# | ca998 | Result | sbb092 |
sbb093 | Dirk van Swaay | 031809 | pBca9495CA-M10022 | 4 | Well# | ca998 | Result | sbb093 |