Salomon Garcia: Lab notebook Week 9

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* For this assignment I chose the old database from fall 2008 and my partner and I are running the decreased portion of the assingment and the file being uploaded is for dataset just in case computer fails.
* For this assignment I chose the old database from fall 2008 and my partner and I are running the decreased portion of the assingment and the file being uploaded is for dataset just in case computer fails.
[[Media:Data_for_use_of_Genmapp_and_mappfinder_Salomon_Garcia_Valencia.zip| Data for GenMAPP and MAPPFinder]]
[[Media:Data_for_use_of_Genmapp_and_mappfinder_Salomon_Garcia_Valencia.zip| Data for GenMAPP and MAPPFinder]]
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'''List of top ten gene ontology that were listed:'''
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#oxidoreductase activity
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#carbo-carbon lyase activity
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#chorismate metabolic process
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#aromatic amino acid family biosynthetic process
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#dicarboxylic acid metabolic process
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#transcription elongation regulator activity
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#outer membrane
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#aromatic amino acid family metabolic process
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#lyase activity
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#naphthoate syntase activity
[[Category:BIOL367/F10]]
[[Category:BIOL367/F10]]

Revision as of 21:32, 26 October 2010

Week 9 Notes

  • total number of errors found while using the old database was a total of 772 genes. This is due to having different versions of the database and using the different database so as expected the older version will have more errors compared to that of the newer version.
  • For this assignment I chose the old database from fall 2008 and my partner and I are running the decreased portion of the assingment and the file being uploaded is for dataset just in case computer fails.

Data for GenMAPP and MAPPFinder

List of top ten gene ontology that were listed:

  1. oxidoreductase activity
  2. carbo-carbon lyase activity
  3. chorismate metabolic process
  4. aromatic amino acid family biosynthetic process
  5. dicarboxylic acid metabolic process
  6. transcription elongation regulator activity
  7. outer membrane
  8. aromatic amino acid family metabolic process
  9. lyase activity
  10. naphthoate syntase activity
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