Salomon Garcia: Week 5

We would like to observe changes in amino acid in the different groups. The article states viral strains from non-progressors showed a possible selection Question: the dS/dN ratio a more determinant on the progressor category than the rate of CD4 T cell decline?

To determine this we will be using the sequences from subject 10 and subject 13. These two subjects were picked based on there similar amount of data points over the same period of time to have a close comparison between the two.

Article: Functional diversity of HIV-1 envelope proteins expressed by contemporaneous plasma viruses: by:Nora T.

• 1. Nora T, Bouchonnet F, Labrosse B, Charpentier C, Mammano F, Clavel F, and Hance AJ. Functional diversity of HIV-1 envelope proteins expressed by contemporaneous plasma viruses. Retrovirology. 2008 Feb 29;5:23. DOI:10.1186/1742-4690-5-23 |

BIOL 398-01: Bioinformatics Lab

• Lab Journal

Salomon Garcia: Week 2	Salomon Garcia: Week 6	Salomon Garcia: Week 11
Salomon Garcia: Week 3	Salomon Garcia: Week 7	Salomon Garcia: Week 12
Salomon Garcia: Week 4	Salomon Garcia: Week 8	Salomon Garcia: Week 13
Salomon Garcia: Week 5	Salomon Garcia: Week 9	Salomon Garcia: Week 14

• Shared Journal

1. BIOL398-01/S10:Class Journal Week 2
2. BIOL398-01/S10:Class Journal Week 3
3. BIOL398-01/S10:Class Journal Week 4
4. BIOL398-01/S10:Class Journal Week 5
5. BIOL398-01/S10:Class Journal Week 6
6. BIOL398-01/S10:Class Journal Week 7
7. BIOL398-01/S10:Class Journal Week 8
8. BIOL398-01/S10:Class Journal Week 9
9. BIOL398-01/S10:Class Journal Week 11
10. BIOL398-01/S10:Class Journal Week 12
11. BIOL398-01/S10:Class Journal Week 13
12. BIOL398-01/S10:Class Journal Week 14

• Assignments

1. BIOL398-01/S10:Week 2
2. BIOL398-01/S10:Week 3
3. BIOL398-01/S10:Week 4
4. BIOL398-01/S10:Week 5
5. BIOL398-01/S10:Week 6
6. BIOL398-01/S10:Week 7
7. BIOL398-01/S10:Week 8
8. BIOL398-01/S10:Week 9
9. BIOL398-01/S10:Week 11
10. BIOL398-01/S10:Week 12
11. BIOL398-01/S10:Week 13
12. BIOL398-01/S10:Week 14

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