Sarah Carratt: Week 6: Difference between revisions

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[[Image:cycle.jpg|thumb|upright=2.5|Variables in Context]]
[[Image:cycle.jpg|thumb|upright=2.5|Variables in Context]]


#nitrogen
#ammonia --> nitrogen
#glucose --> carbon
#α-ketogluterate
#α-ketogluterate
#glutamate
#glutamate
#glutamine
#glutamine


These four variables are the things that we will need to watch/model as they change over time. In the image, these variables can be seen in context of nitrogen metabolism.
These five variables are the things that we will need to watch/model as they change over time. In the image, these variables can be seen in context of nitrogen metabolism.


===System of Differential Equations===
===System of Differential Equations===

Revision as of 00:29, 22 February 2011

Instructions

  • List the state variables needed to model the process of interest.
  • Propose at least one system of differential equations you think will model the dynamics.
  • Discuss the terms in your equation(s) in order to justify your choices.
  • List all parameters your model requires for numerical simulation.
  • Discuss the relationship between the data in the papers by ter Schure et al and the state variables (and parameters).

Online Sources

Student Response

Variables Needed for a Model

Variables in Context
  1. ammonia --> nitrogen
  2. glucose --> carbon
  3. α-ketogluterate
  4. glutamate
  5. glutamine

These five variables are the things that we will need to watch/model as they change over time. In the image, these variables can be seen in context of nitrogen metabolism.

System of Differential Equations

Discussion of Terms

Parameters for Model

Relationship between ter Schure et al and Parameters

Navigation Guide

Individual Assignments

Sarah Carratt: Week 2 Sarah Carratt: Week 6 Sarah Carratt: Week 11
Sarah Carratt: Week 3 Sarah Carratt: Week 7 Sarah Carratt: Week 12
Sarah Carratt: Week 4 Sarah Carratt: Week 8 Sarah Carratt: Week 13
Sarah Carratt: Week 5 Sarah Carratt: Week 9 Sarah Carratt: Week 14

Class Assignments

Shared Journal: Week 1 Shared Journal: Week 6 Shared Journal: Week 11
Shared Journal: Week 2 Shared Journal: Week 7 Shared Journal: Week 12
Shared Journal: Week 3 Shared Journal: Week 8 Shared Journal: Week 13
Shared Journal: Week 4 Shared Journal: Week 9 Shared Journal: Week 14
Shared Journal: Week 5 Shared Journal: Week 10

Class Notes

Sarah Carratt_1.18.11 Sarah Carratt_2.3.11 Sarah Carratt_2.22.11
Sarah Carratt_1.20.11 Sarah Carratt_2.8.11 Sarah Carratt_2.24.11
Sarah Carratt_1.25.11 Sarah Carratt_2.10.11 Sarah Carratt_3.1.11
Sarah Carratt_1.27.11 Sarah Carratt_2.15.11 Sarah Carratt_3.3.11
Sarah Carratt_2.1.11 Sarah Carratt_2.17.11 Sarah Carratt_3.8.11

Internal Links

BIOL398-01/S11:Assignments BIOL398-01/S11:People BIOL398-01/S11:Sarah Carratt