Satya Arjunan

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==Background==
==Background==
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I completed my PhD in Systems Biology at the [http://www.iab.keio.ac.jp/ Institute for Advanced Biosciences], Keio University in 2009. My thesis can be found [http://openwetware.org/images/b/bc/2009.arjunan.keio.pdf here]. I developed a multicompartmental spatiotemporal stochastic simulation algorithm, called [http://spatiocyte.org Spatiocyte], with applications in bacterial division site placement control. I am also a member of the [http://www.e-cell.org/ E-Cell Project]. In the past, I have worked on protein secondary structure prediction and distributed parallel computing. I completed my MSc in Computer Science and BEng in Electronics Engineering at Universiti Teknologi Malaysia.
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I completed my PhD in Systems Biology at the [http://www.iab.keio.ac.jp/ Institute for Advanced Biosciences], Keio University in 2009. My thesis can be found [http://openwetware.org/images/b/bc/2009.arjunan.keio.pdf here]. I developed a multicompartmental spatiotemporal stochastic simulation method, called [http://spatiocyte.org Spatiocyte], with applications in bacterial division site placement control. I am also a member of the [http://www.e-cell.org/ E-Cell Project]. In the past, I have worked on protein secondary structure prediction and distributed parallel computing. I completed my MSc in Computer Science and BEng in Electronics Engineering at Universiti Teknologi Malaysia.
Currently I am a postdoc at the RIKEN Quantitative Biology Center in Osaka, Japan.
Currently I am a postdoc at the RIKEN Quantitative Biology Center in Osaka, Japan.
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==Journal Publications==
==Journal Publications==
My Google Scholar page can be found [http://scholar.google.com/citations?user=FGHQqjkAAAAJ&hl=en here].
My Google Scholar page can be found [http://scholar.google.com/citations?user=FGHQqjkAAAAJ&hl=en here].
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* Abdullah, A., Deris, S., Anwar, S. and '''Arjunan, S. N. V.''' (2013). An evolutionary Firefly Algorithm for the estimation of nonlinear biological model parameters. PLoS ONE. (in press)
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* Abdullah, A., Deris, S., Anwar, S. and '''Arjunan, S. N. V.''' (2013). [http://dx.plos.org/10.1371/journal.pone.0056310 An evolutionary Firefly Algorithm for the estimation of nonlinear biological model parameters]. PLoS ONE 8(3): e56310.
*'''Arjunan, S. N. V.''' and Tomita, M. (2010). [http://www.springerlink.com/content/438375471t332vx6 A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of E. coli MinE to E-ring formation]. Systems and Synthetic Biology 4(1): 35-53 [http://www.springerlink.com/content/438375471t332vx6/fulltext.pdf pdf].
*'''Arjunan, S. N. V.''' and Tomita, M. (2010). [http://www.springerlink.com/content/438375471t332vx6 A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of E. coli MinE to E-ring formation]. Systems and Synthetic Biology 4(1): 35-53 [http://www.springerlink.com/content/438375471t332vx6/fulltext.pdf pdf].
*'''Arjunan, S. N. V.''' and Tomita, M. (2009). [http://precedings.nature.com/documents/3526/version/1 Modeling reaction-diffusion of molecules on surface and in volume spaces with the E-Cell System]. International Journal of Computer Science and Information Security. 3(1): 211–216. [http://precedings.nature.com/documents/3526/version/1/files/npre20093526-1.pdf pdf]
*'''Arjunan, S. N. V.''' and Tomita, M. (2009). [http://precedings.nature.com/documents/3526/version/1 Modeling reaction-diffusion of molecules on surface and in volume spaces with the E-Cell System]. International Journal of Computer Science and Information Security. 3(1): 211–216. [http://precedings.nature.com/documents/3526/version/1/files/npre20093526-1.pdf pdf]

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Contents

Background

I completed my PhD in Systems Biology at the Institute for Advanced Biosciences, Keio University in 2009. My thesis can be found here. I developed a multicompartmental spatiotemporal stochastic simulation method, called Spatiocyte, with applications in bacterial division site placement control. I am also a member of the E-Cell Project. In the past, I have worked on protein secondary structure prediction and distributed parallel computing. I completed my MSc in Computer Science and BEng in Electronics Engineering at Universiti Teknologi Malaysia.

Currently I am a postdoc at the RIKEN Quantitative Biology Center in Osaka, Japan.


Journal Publications

My Google Scholar page can be found here.

Books and Book Chapters

Contact

Satya Nanda Vel Arjunan
satya.arjunan@[].com [gmail]
Laboratory for Biochemical Simulation
RIKEN Quantitative Biology Center
OLABB, Osaka University
6-2-3, Furuedai, Suita
Osaka 565-0874, JAPAN
Phone: +81-6-6155-0111
http://www.qbic.riken.jp/english/index.html

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