Satya Arjunan

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*Arjunan, S. N. V. (2012). [http://www.landesbioscience.com/curie/chapter/5351/ A guide to Modeling Reaction-Diffusion of Molecules with the E-Cell System]. In: E-Cell System: Basic Concepts and Applications, Arjunan, S. N. V., Dhar, P. K. and Tomita, M. (editors). Landes Bioscience (Georgetown, Texas) and Springer Science+Business Media. [http://openwetware.org/images/0/05/2012.arjunan.chapter.landes.bioscience.pdf pdf]
*Arjunan, S. N. V. (2012). [http://www.landesbioscience.com/curie/chapter/5351/ A guide to Modeling Reaction-Diffusion of Molecules with the E-Cell System]. In: E-Cell System: Basic Concepts and Applications, Arjunan, S. N. V., Dhar, P. K. and Tomita, M. (editors). Landes Bioscience (Georgetown, Texas) and Springer Science+Business Media. [http://openwetware.org/images/0/05/2012.arjunan.chapter.landes.bioscience.pdf pdf]
*Arjunan, S. N. V., Dhar, P. K. and Tomita, M. (editors). [http://www.landesbioscience.com/books/iu/id/953/?nocache=2071954650 E-Cell System: Basic Concepts and Applications]. Landes Bioscience (Georgetown, Texas) and Springer Science+Business Media.
*Arjunan, S. N. V., Dhar, P. K. and Tomita, M. (editors). [http://www.landesbioscience.com/books/iu/id/953/?nocache=2071954650 E-Cell System: Basic Concepts and Applications]. Landes Bioscience (Georgetown, Texas) and Springer Science+Business Media.
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==Conferences==
 
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*Arjunan, S. N. V. and Tomita, M. A 3D pole-to-pole oscillation model of MinD spiral formation on growing Escherichia coli membrane. Seventh International Conference on Systems Biology (ICSB 2006), Yokohama, Japan.
 
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*Arjunan, S. N. V., Kratz, A. and Tomita, M. 3D Monte Carlo stochastic simulation of bacterial division site placement on a graphics processing unit is significantly faster than conventional CPU implementation. Seventh International Conference on Systems Biology (ICSB 2006), Yokohama, Japan.
 
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*Arjunan, S. N. V., Yeo, Z. X., Tomita, M. and Tsuchiya, M. Cellogica: A tool to analyze and control the dynamics of cis-regulatory systems. Seventh International Conference on Systems Biology (ICSB 2006), Yokohama, Japan.
 
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*Arjunan, S. N. V. and Selvarajoo, K. Factoring glucokinase sequestration in silico affects glycolytic network kinetics. Seventh International Conference on Systems Biology (ICSB 2006), Yokohama, Japan.
 
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*Arjunan, S. N. V., Takahashi, K. and Tomita, M. (Nov 2003). Shared-Memory Multiprocessing of Gillespie's Stochastic Simulation Algorithm on E-Cell 3. Fourth International Conference on Systems Biology (ICSB 2003), St. Louis, USA.
 
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*Takahashi, K., Sakurada, T., Kaizu, K., Kitayama, T., Arjunan, S. N. V., Ishida, T., Bereczki, G., Ito, D., Sugimoto, M., Komori, T., Seiji, O. and Tomita, M. (2003). E-Cell System Version 3: A Software Platform for Integrative Computational Biology. In Genome Informatics 2003, M. Gribskov, M. Kanehisa, S. Miyano, and T. Takagi (editors). Universal Academy Press, Tokyo. Pages: 294-295
 
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==Talks==
 
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*Arjunan, S. N. V. (March 2005). Mesoscale Simulation Approaches in Systems Biology: Recent Advances and Future Directions. Workshop on Particle Methods and Mesoscale Simulation of Liquids, Warrington, U. K.
 
==Contact==
==Contact==

Revision as of 02:23, 4 February 2012

Image:satya.arjunan.png


Contents

Background

I completed my PhD in Systems Biology at the Institute for Advanced Biosciences, Keio University in 2009. My thesis can be found here. I developed a multicompartmental spatiotemporal stochastic simulation algorithm, called Spatiocyte, with applications in bacterial division site placement control. I am also a member of the E-Cell Project. In the past, I have worked on protein secondary structure prediction and distributed parallel computing. I completed my MSc in Computer Science and BEng in Electronics Engineering at Universiti Teknologi Malaysia.

Currently I am a postdoc at the RIKEN Quantitative Biology Center in Osaka, Japan.


Journal Publications

My Google Scholar Citations page can be found here.

Books and Book Chapters

Contact

Satya Nanda Vel Arjunan
satya.arjunan@[].com [gmail]
Laboratory for Biochemical Simulation
RIKEN Quantitative Biology Center
OLABB, Osaka University
6-2-3, Furuedai, Suita
Osaka 565-0874, JAPAN
Phone: +81-6-6155-0111
http://www.qbic.riken.jp/english/index.html

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