Sauer:Links

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(Biology-related tools)
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi PubMed]
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi PubMed]
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[http://www.rcsb.org/pdb/home/home.do RCSB Protein Data Bank]
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*International database of 3D biological macromolecules
[http://us.expasy.org/ ExPASy Proteomics server]
[http://us.expasy.org/ ExPASy Proteomics server]
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*UCSF mass spec site to search fragments, etc. to identify your protein
*UCSF mass spec site to search fragments, etc. to identify your protein
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*[http://www.bioinfo.rpi.edu/applications/mfold/ mFold] by Michael Zuker.
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[http://www.bioinfo.rpi.edu/applications/mfold/ mFold] by Michael Zuker.
*This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.
*This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.
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More good stuff on the [[Synthetic Biology:Tools]] page.
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Also see [[Web resources|Science Web Resources]].
=Companies=
=Companies=
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[http://web.mit.edu/ecat/ MIT ECAT ordering]
[http://web.mit.edu/ecat/ MIT ECAT ordering]
*Certificate required
*Certificate required
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*can also get to Sciquest from here and order from GE Healthcare (formerly Amersham), PerkinElmer, Qiagen, Roche Applied Science, USA Scientific, Newark InOne, Sigma-Aldrich, Invitrogen (coming soon) using your MIT account number instead of a credit card.
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*For instructions on how to use ECAT, see the [[Sauer:FAQs|FAQs page]].
[http://web.mit.edu/sapweb/PS1/index.shtml MIT SAPweb]
[http://web.mit.edu/sapweb/PS1/index.shtml MIT SAPweb]
*Purchase orders, requisitions, etc. Certificate required.
*Purchase orders, requisitions, etc. Certificate required.
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[http://web.mit.edu/biopolymers/www/ Biopolymers facility]
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*DNA sequencing, mass spectrometry, protein sequencing, peptide synthesis.

Current revision

SAUER LAB

Home        Protocols        Lab Members        Materials        Equipment        Links        Internal       

Biology-related tools

PubMed

RCSB Protein Data Bank

  • International database of 3D biological macromolecules

ExPASy Proteomics server

  • links to many pages to calculate parameters of your favorite proteins

Colibri

  • E. coli genome site; get sequences, see the position of your gene in the chromosome, and other fun stuff

Biopolymer calculator

  • calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein

Novagen pET vector table

  • table with links to properties/sequences of pET vectors
  • note: slow to load

Protein Prospector

  • UCSF mass spec site to search fragments, etc. to identify your protein

mFold by Michael Zuker.

  • This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.

More good stuff on the Synthetic Biology:Tools page.

Also see Science Web Resources.

Companies

IDT

Sigma

Pierce

New England Biolabs

Amersham

MIT Links

MIT website

MIT Biology department website

MIT webmail

  • Login required

MIT ECAT ordering

  • Certificate required
  • can also get to Sciquest from here and order from GE Healthcare (formerly Amersham), PerkinElmer, Qiagen, Roche Applied Science, USA Scientific, Newark InOne, Sigma-Aldrich, Invitrogen (coming soon) using your MIT account number instead of a credit card.
  • For instructions on how to use ECAT, see the FAQs page.

MIT SAPweb

  • Purchase orders, requisitions, etc. Certificate required.

Biopolymers facility

  • DNA sequencing, mass spectrometry, protein sequencing, peptide synthesis.
Personal tools