Sequence analysis
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| + | The sequence of a linear polymer such as a protein, DNA or RNA is the [[wikipedia:sequence|sequence]] formed by its [[wikipedia:monomer|monomers]]. It is also referred to as the ''primary structure'' of a given molecule. | ||
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| + | The sequence of standard proteins, DNA, or RNA can be expressed as a string over a finite alphabet that represents well-studied monomers. It allows the development of many powerful algorithms and statistics. | ||
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| + | Although sequence analysis constitutes an important panel of [[bioinformatics]], sequences are only one of the many forms of experimental data that are available to the bioinformatician. | ||
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==Protocols== | ==Protocols== | ||
===General=== | ===General=== | ||
{{#dpl:category=Sequence analysis|category=Protocol|nottitlematch=%:%}} | {{#dpl:category=Sequence analysis|category=Protocol|nottitlematch=%:%}} | ||
| + | ===Lab-specific protocols=== | ||
| + | {{#dpl:category=Sequence analysis|category=Protocol|titlematch=%:%}} | ||
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| + | == See also == | ||
| + | * [[Wikipedia:Primary structure]] | ||
| + | * An almost complete list of alignment tools : [[wikipedia:Sequence alignment software]]. | ||
| + | == Further reading == | ||
| + | <biblio> | ||
| + | #durbin isbn=0521629713 // subtitle: ''Probabilistic models of proteins and nucleic acids'' | ||
| + | </biblio> | ||
[[Category:Sequence analysis]] | [[Category:Sequence analysis]] | ||
Current revision
The sequence of a linear polymer such as a protein, DNA or RNA is the sequence formed by its monomers. It is also referred to as the primary structure of a given molecule.
The sequence of standard proteins, DNA, or RNA can be expressed as a string over a finite alphabet that represents well-studied monomers. It allows the development of many powerful algorithms and statistics.
Although sequence analysis constitutes an important panel of bioinformatics, sequences are only one of the many forms of experimental data that are available to the bioinformatician.
Contents |
Protocols
General
Lab-specific protocols
- Tregwiki:Collected regulatory elements
- Wikiomics:BLAST
- Wikiomics:BLAST tutorial
- Wikiomics:DNA sequencing
- Wikiomics:FASTA
- Wikiomics:Multiple sequence alignment
- Wikiomics:Mutation/SNP detection
- Wikiomics:Orthologues
- Wikiomics:PSI-BLAST
- Wikiomics:Percentage identity
- Wikiomics:Phylogenetic databases
- Wikiomics:Protein function prediction
- Wikiomics:RNA gene-finding
- Wikiomics:RNA homology search
- Wikiomics:RNA phylogenetics
- Wikiomics:RNA secondary structure prediction
- Wikiomics:RNA splicing
- Wikiomics:SAGE
- Wikiomics:Sequence motifs
See also
- Wikipedia:Primary structure
- An almost complete list of alignment tools : wikipedia:Sequence alignment software.
Further reading
- Richard Durbin... [et al.]. Biological sequence analysis. Cambridge, UK: Cambridge University Press, 1998. isbn:0521629713.
subtitle: Probabilistic models of proteins and nucleic acids
