Shreffler:Resources

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(R analysis)
(R analysis)
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*[[Image:AAAAI_rCode.R]]
*[[Image:AAAAI_rCode.R]]
** Lara's analysis script for her abstract using data file, 20080818_BaselineBasoDataWithClinicalGroups.csv. Example of 2-way ANOVA.
** Lara's analysis script for her abstract using data file, 20080818_BaselineBasoDataWithClinicalGroups.csv. Example of 2-way ANOVA.
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*[[Image:BasoAct_Boxplots.R]]
 
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** Lara's script to generate boxplots of the interim basophil data using data file, [[Image:20080818_BaselineBasoDataWithClinicalGroups.csv]]. Shows subsetting, some descriptive statistics and some manipulation of graphs.
 
===Shell===
===Shell===

Revision as of 09:30, 22 September 2009

Image:Shrefflab.png

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Contents

Protocols

Reading List

Error fetching PMID 19635859:
Error fetching PMID 19635864:
Error fetching PMID 19506051:
Error fetching PMID 19564353:
Error fetching PMID 19528258:
Error fetching PMID 19487420:
Error fetching PMID 19578369:
Error fetching PMID 19561615:
  1. Error fetching PMID 19635859: [Steinfelder]
  2. Error fetching PMID 19635864: [Everts]
    two significant papers on SEA as Th2 adjuvants

  3. Error fetching PMID 19506051: [Susuki]
    interesting for methods related to baso confocal project

  4. Error fetching PMID 19564353: [Geiger]
    another methodology paper perhaps for frequency of allergen-specific T cells

  5. Error fetching PMID 19528258: [Campbell]
    madhan's project

  6. Error fetching PMID 19487420: [la_Sala]
    mechanisms of CT

  7. Error fetching PMID 19578369: [Duhen]
    characterization of a distinct Th subset producing IL-22; relevance to PN adjuvant?, second independent paper also published back-to-back

  8. Error fetching PMID 19561615: [Okamoto]
    new transcriptional regulator for Th2 described, could be useful for Th2 phenotyping

All Medline abstracts: PubMed HubMed

Scripts

R analysis

  • Image:Array flinterman.R
    • script used for Flinterman paper -- one of the first 'BATCH' functions for analysis of multiple data files
  • Image:Jax pcr.R
    • for analysis of pbmc pcr data in the JAX project -- good use of %in% and grep as well as loops to mash data together from two sources
  • Image:Milk mash script.R
    • script used by Wayne and Lara to do interim analysis of milk basophil data
  • Image:AAAAI rCode.R
    • Lara's analysis script for her abstract using data file, 20080818_BaselineBasoDataWithClinicalGroups.csv. Example of 2-way ANOVA.

Shell

Perl

Courses

Personal tools