Shreffler R course:Materials: Difference between revisions
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=== Session 1 === | === Session 1 === | ||
#Introduction to R and the working environment | |||
#Introduction to R studio | |||
#Introduction to [http://www.hsph.harvard.edu/research/aedin-culhane/ Sweave] and 'Reproducible Research' | |||
==== Assignment 1 ==== | ==== Assignment 1 ==== | ||
[http://mercury.bio.uaf.edu/mercury/R/R.html lessons 1-4 here] | [http://mercury.bio.uaf.edu/mercury/R/R.html lessons 1-4 here] | ||
[[Media:R_course_1.zip | Archive file containing slides (pdf), data file and R source code]]. | [[Media:R_course_1.zip | Archive file containing slides (pdf), data file and R source code]]. | ||
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Launch R file directly (double click) from the uncompressed folder so that the R environment variable is set to that folder, otherwise edit lines 55 and 58 to include the correct path to the data file. | Launch R file directly (double click) from the uncompressed folder so that the R environment variable is set to that folder, otherwise edit lines 55 and 58 to include the correct path to the data file. | ||
=== Session | === Session 2 === | ||
==== Assignment 2 ==== | ==== Assignment 2 ==== | ||
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[[Media:R_lesson1.pdf | Slides only]] | [[Media:R_lesson1.pdf | Slides only]] | ||
=== Session | === Session 3 === | ||
==== Assignment 3 ==== | ==== Assignment 3 ==== | ||
*[[BasoAct_Boxplots.R | BasoAct_Boxplots.R]] | *[[Media:BasoAct_Boxplots.R | BasoAct_Boxplots.R]] | ||
** Lara's script to generate boxplots of the interim basophil data using this [[Media:20080818_BaselineBasoDataWithClinicalGroups.csv | data file]]. | ** Lara's script to generate boxplots of the interim basophil data using this [[Media:20080818_BaselineBasoDataWithClinicalGroups.csv | data file]]. | ||
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Archive file [[Media:BasoAct_Boxplots.zip | here]] including pdf's of output. | Archive file [[Media:BasoAct_Boxplots.zip | here]] including pdf's of output. | ||
=== Session | === Session 4 === | ||
==== Assignment 4 ==== | ==== Assignment 4 ==== | ||
Revision as of 06:01, 13 July 2011
Quick reference card by E. Paradis
Course Materials
Session 1
- Introduction to R and the working environment
- Introduction to R studio
- Introduction to Sweave and 'Reproducible Research'
Assignment 1
Archive file containing slides (pdf), data file and R source code.
Launch R file directly (double click) from the uncompressed folder so that the R environment variable is set to that folder, otherwise edit lines 55 and 58 to include the correct path to the data file.
Session 2
Assignment 2
Media:R_course_2.zip Slides only
Session 3
Assignment 3
- BasoAct_Boxplots.R
- Lara's script to generate boxplots of the interim basophil data using this data file.
Shows subsetting, some descriptive statistics and some manipulation of graphs.
Archive file here including pdf's of output.
Session 4
Assignment 4
Analysis of JAX pcr data producing scatter and boxplot figures
