Smolke:Enzyme inventory: Difference between revisions

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==Enzyme Stocks==
==Rules==
*Two restriction enzyme coolers are in -20C over the Quanta bay, one labeled common.
*Only common enzymes may have backup, which are stored in main -20C.
*Common enzymes: AgeI, AleI, ApaI, AvrII, BamHI, DpnI, EcoRI, EcoRV, HindIII, MfeI, NotI, SacI, SacII, SalI, XbaI, XhoI 
*The enzymes not listed are in the non-common enzyme cooler.
*If the enzyme is available in HF form, only the HF form will be in the backup unless otherwise requested.
*When the working stock has been used up, replace with a new tube from the backup cooler and write the enzyme on the whiteboard.
*Backup ligases and CIP are also in the backup cooler in main -20C.
 
==Restriction Enzymes in Stocks==
{| border="1" class="wikitable" style="text-align:center"
{| border="1" class="wikitable" style="text-align:center"
! Enzyme !! Regular !! HF !! Regular Backup !! HF Backup
! Enzyme !! Regular !! HF !! Regular Backup !! HF Backup
|-
|-
! AgeI || Yes || Yes
! AflII ||Y|| || ||
|-
! AgeI ||Y||Y|| ||Y
|-
! AleI ||Y|| ||Y||
|-
! ApaI ||Y|| ||YY||
|-
! AscI ||Y|| || ||
|-
! AsiSI ||Y|| ||Y||
|-
! AvrII ||Y|| ||Y||
|-
! BamHI ||Y||Y|| ||Y
|-
! BglII ||Y|| || ||
|-
! BsaI || ||Y|| ||
|-
! BsrGI ||Y|| || ||
|-
! BstBI ||Y|| || ||
|-
! BstXI ||Y|| || ||
|-
! Bsu36I ||Y|| || ||
|-
! ClaI ||Y|| ||Y||
|-
! DpnI ||Y|| ||Y|| 
|-
! EcoRI || ||Y|| ||Y
|-
! EcoRV || ||Y|| ||Y
|-
! FseI ||Jay's -80|| || ||
|-
! HindIII ||Y||Y||Y||
|-
! KasI || || || ||Y
|-
! KpnI ||Y||Y|| ||Y
|-
! MfeI || ||Y|| ||Y
|-
! NdeI ||Y|| || ||
|-
! NheI ||Y||Y|| ||
|-
! NotI ||Y||Y|| ||Y
|-
! NruI ||Y|| || ||
|-
! PacI ||Y|| || ||
|-
|-
! AleI || Yes ||
! PmeI ||Y|| || ||
|-
|-
! ApaI || Yes ||
! PstI ||Y|| || ||
|-
|-
! BamHI || Yes || Yes
! PvuII || || Y || ||
|-
|-
! DpnI || Yes ||
! SacI || ||Y|| ||Y
|-
|-
! EcoRI || Yes || Yes
! SacII ||Y|| ||Y||  
|-
|-
! EcoRV || Yes || Yes
! SalI ||Y||Y|| ||Y
|-
|-
! HindIII || Yes ||  
! SapI ||Y|| || ||
|-
|-
! MfeI || Yes || Yes
! SbfI || ||Y|| ||
|-
|-
! NotI || Yes || Yes
! SpeI ||Y|| ||Y||
|-
|-
! SacI || Yes || Yes
! SphI || ||Y|| ||
|-
|-
! SacII || Yes ||  
! SwaI ||Y|| || ||
|-
|-
! SaII || Yes || Yes
! XbaI ||Y|| ||Y|| 
|-
|-
! XbaI || Yes ||   
! XhoI ||Y|| ||Y||   
|-
|-
! XhoI || Yes ||
! XmaI ||Y|| || ||
|-
|-
|}
|}


==Notes==
==Useful Links==
*Details on high fidelity (HF) restriction enzyme from NEB: http://www.neb.com/nebecomm/tech_reference/restriction_enzymes/HF_enzymes.asp
*What is [http://www.neb.com/nebecomm/tech_reference/restriction_enzymes/HF_enzymes.asp high fidelity (HF)] restriction enzyme?
*NEB double digest finder: http://www.neb.com/nebecomm/DoubleDigestCalculator.asp
*[http://www.neb.com/nebecomm/DoubleDigestCalculator.asp Double digest] finder


==Contact==
==Contact==
[[User:jliang|Joe]]
*remus

Latest revision as of 14:40, 21 August 2014

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Rules

  • Two restriction enzyme coolers are in -20C over the Quanta bay, one labeled common.
  • Only common enzymes may have backup, which are stored in main -20C.
  • Common enzymes: AgeI, AleI, ApaI, AvrII, BamHI, DpnI, EcoRI, EcoRV, HindIII, MfeI, NotI, SacI, SacII, SalI, XbaI, XhoI
  • The enzymes not listed are in the non-common enzyme cooler.
  • If the enzyme is available in HF form, only the HF form will be in the backup unless otherwise requested.
  • When the working stock has been used up, replace with a new tube from the backup cooler and write the enzyme on the whiteboard.
  • Backup ligases and CIP are also in the backup cooler in main -20C.

Restriction Enzymes in Stocks

Enzyme Regular HF Regular Backup HF Backup
AflII Y
AgeI Y Y Y
AleI Y Y
ApaI Y YY
AscI Y
AsiSI Y Y
AvrII Y Y
BamHI Y Y Y
BglII Y
BsaI Y
BsrGI Y
BstBI Y
BstXI Y
Bsu36I Y
ClaI Y Y
DpnI Y Y
EcoRI Y Y
EcoRV Y Y
FseI Jay's -80
HindIII Y Y Y
KasI Y
KpnI Y Y Y
MfeI Y Y
NdeI Y
NheI Y Y
NotI Y Y Y
NruI Y
PacI Y
PmeI Y
PstI Y
PvuII Y
SacI Y Y
SacII Y Y
SalI Y Y Y
SapI Y
SbfI Y
SpeI Y Y
SphI Y
SwaI Y
XbaI Y Y
XhoI Y Y
XmaI Y

Useful Links

Contact

  • remus