Smolke:Journal Club: Difference between revisions

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#han pmid=19135890
#han pmid=19135890
#fung pmid=15875027
#fung pmid=15875027
#nevozhay pmid=19279212


</biblio>
</biblio>
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*I found the Ham et al. <cite>ham</cite> paper extremely disappointing. If you want an example of what not to do, it's a good one. But otherwise I'd skip it. -Josh
*I found the Ham et al. <cite>ham</cite> paper extremely disappointing. If you want an example of what not to do, it's a good one. But otherwise I'd skip it. -Josh
*I suggested the Ham et al. <cite>ham</cite> mostly to throw out a paper about synthetic information processing in cells.  It is outside my area of familiarity, but I think it could be interesting, especially since that is what the Endy lab is gearing up to attack.  So if anyone else has a good recent paper on some synthetic biology approach to information processing, I think that might be cool for us to read and critique. -Mike
*I suggested the Ham et al. <cite>ham</cite> mostly to throw out a paper about synthetic information processing in cells.  It is outside my area of familiarity, but I think it could be interesting, especially since that is what the Endy lab is gearing up to attack.  So if anyone else has a good recent paper on some synthetic biology approach to information processing, I think that might be cool for us to read and critique. -Mike
*7 and 8 can be reviewed together if anyone is interested. They are very similar (8 is kinda a modified version of 7). It's amazing that they got published in two high-profile journals. -Win


==Voting on Papers==
==Voting on Papers==
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*Paper 5.
*Paper 5.
*Paper 6. Andrew
*Paper 6. Andrew
*Paper 7.  
*Paper 7. Josh
*Paper 8. Joe, Yvonne, Arwen, Win, DK


==Past Papers==
==Past Papers==

Revision as of 17:11, 8 April 2009

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Suggested Future Papers

  1. Ray PS, Jia J, Yao P, Majumder M, Hatzoglou M, and Fox PL. A stress-responsive RNA switch regulates VEGFA expression. Nature. 2009 Feb 12;457(7231):915-9. DOI:10.1038/nature07598 | PubMed ID:19098893 | HubMed [ray]
  2. Runguphan W and O'Connor SE. Metabolic reprogramming of periwinkle plant culture. Nat Chem Biol. 2009 Mar;5(3):151-3. DOI:10.1038/nchembio.141 | PubMed ID:19151732 | HubMed [ranguphan]
  3. Ham TS, Lee SK, Keasling JD, and Arkin AP. Design and construction of a double inversion recombination switch for heritable sequential genetic memory. PLoS One. 2008 Jul 30;3(7):e2815. DOI:10.1371/journal.pone.0002815 | PubMed ID:18665232 | HubMed [ham]
  4. Yu RC, Pesce CG, Colman-Lerner A, Lok L, Pincus D, Serra E, Holl M, Benjamin K, Gordon A, and Brent R. Negative feedback that improves information transmission in yeast signalling. Nature. 2008 Dec 11;456(7223):755-61. DOI:10.1038/nature07513 | PubMed ID:19079053 | HubMed [yu]
  5. Han J, Pedersen JS, Kwon SC, Belair CD, Kim YK, Yeom KH, Yang WY, Haussler D, Blelloch R, and Kim VN. Posttranscriptional crossregulation between Drosha and DGCR8. Cell. 2009 Jan 9;136(1):75-84. DOI:10.1016/j.cell.2008.10.053 | PubMed ID:19135890 | HubMed [han]
  6. Fung E, Wong WW, Suen JK, Bulter T, Lee SG, and Liao JC. A synthetic gene-metabolic oscillator. Nature. 2005 May 5;435(7038):118-22. DOI:10.1038/nature03508 | PubMed ID:15875027 | HubMed [fung]
  7. Nevozhay D, Adams RM, Murphy KF, Josic K, and Balázsi G. Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression. Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5123-8. DOI:10.1073/pnas.0809901106 | PubMed ID:19279212 | HubMed [nevozhay]
All Medline abstracts: PubMed | HubMed

Comments on Papers

  • I found the Ham et al. [3] paper extremely disappointing. If you want an example of what not to do, it's a good one. But otherwise I'd skip it. -Josh
  • I suggested the Ham et al. [3] mostly to throw out a paper about synthetic information processing in cells. It is outside my area of familiarity, but I think it could be interesting, especially since that is what the Endy lab is gearing up to attack. So if anyone else has a good recent paper on some synthetic biology approach to information processing, I think that might be cool for us to read and critique. -Mike

Voting on Papers

  • Paper 1. Midori, Jay, Christina
  • Paper 2. Mike, Josh
  • Paper 3.
  • Paper 4. Josh, Win, Christina
  • Paper 5.
  • Paper 6. Andrew
  • Paper 7. Josh

Past Papers

<biblio>

  1. lincoln pmid=19131595
  2. lam pmid=19234448

<biblio>