Smolke:Journal Club

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*'''Wörsdörfer et al.''':
*'''Wörsdörfer et al.''':
*'''Chen et al''':
*'''Chen et al''':
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*'''Huo et al.''':
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*'''Huo et al.''':Mike
*'''Esvelt et al.''':
*'''Esvelt et al.''':

Revision as of 15:52, 16 April 2011

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Contents

Next Meeting

  • When: 2/15, 4 pm
  • Alt Dates:
    • 2/16 - 4 pm
  • Where: Y2E2 300
  • Paper: Tamsir et al. and Regot et al.
  1. []
  • Moderator: Kathy

Suggested Future Papers

Note: The biblio extension is broken. Suggested papers need full references.

  1. Poliseno L, Salmena L, Zhang J, Carver B, Haveman WJ, Pandolfi PP. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature.465(7301):1033-8.
  2. O'Shaughnessy EC, Palani S, Collins JJ, Sarkar CA. Tunable Signal Processing in Synthetic MAP Kinase Cascades. Cell.144(1):119-31.
  3. Churchman LS, Weissman JS. Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature.469(7330):368-73.
  4. Wörsdörfer B, Woycechowsky KJ, and Hilvert, D. Directed Evolution of a Protein Container. Science 4 February 2011: 331 (6017), 589-592.
  5. Chen X, Denison L, Levy M, Ellington AD. Direct selection for ribozyme cleavage activity in cells. RNA 23 November 2009: 15 (11), 2035-45.
  6. Huo YX, Cho KM, Rivera JG, Monte E, Shen CR, Yan Y, Liao JC. Conversion of proteins into biofuels by engineering nitrogen flux. Nat Biotechnol. 2011 Mar 6.
  7. Esvelt KM, Carlson JC, Liu DR. A system for the continuous directed evolution of biomolecules. Nature. 2011.

Comments on Papers

Voting on Papers

  • Poliseno et al.:
  • O'Shaughnessy et al.:
  • Churchman and Weissman:
  • Wörsdörfer et al.:
  • Chen et al:
  • Huo et al.:Mike
  • Esvelt et al.:

Past Papers

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  1. Error fetching PMID 20671186: [schirmer]
  2. Error fetching PMID 20453864: [sinha]
  3. Error fetching PMID 20154731: [neumann]
  4. Error fetching PMID 19745116: [drinnenberg]
  5. Error fetching PMID 19648908: [dueber]
  6. Error fetching PMID 19633652: [wang]
  7. Error fetching PMID 19079053: [yu]
  8. Error fetching PMID 19131595: [lincoln]
  9. Error fetching PMID 19234448: [lam]
  10. Error fetching PMID 19279212: [nevozhay]
All Medline abstracts: PubMed HubMed

Aged Out

  1. Leonard E, Ajikumar PK, Thayer K, Xiao WH, Mo JD, Tidor B, et al. Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control. Proc Natl Acad Sci U S A.107(31):13654-9. PMCID: 2922259.
  2. Matzas M, Stahler PF, Kefer N, Siebelt N, Boisguerin V, Leonard JT, et al. High-fidelity gene synthesis by retrieval of sequence-verified DNA identified using high-throughput pyrosequencing. Nat Biotechnol.28(12):1291-4.
  3. Kosuri S, Eroshenko N, Leproust EM, Super M, Way J, Li JB, et al. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips. Nat Biotechnol.28(12):1295-9.
  4. Peter Y Watson and Martha J Fedor. The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo. Nature Structural & Molecular Biology March 2011: 18 (3), 359-363.
  5. Lartigue C, Vashee S, Algire MA, Chuang RY, Benders GA, Ma L, et al. Creating bacterial strains from genomes that have been cloned and engineered in yeast. Science. 2009;325(5948):1693-6.
  6. Iliopoulos D, Hirsch HA, Struhl K. An epigenetic switch involving NF-kappaB, Lin28, Let-7 MicroRNA, and IL6 links inflammation to cell transformation. Cell. 2009;139(4):693-706. PMCID: 2783826.
  7. Agresti JJ, Antipov E, Abate AR, Ahn K, Rowat AC, Baret JC, et al. Ultrahigh-throughput screening in drop-based microfluidics for directed evolution. Proc Natl Acad Sci U S A.107(9):4004-9. PMCID: 2840095.
  8. Verhounig A, Karcher D, Bock R. Inducible gene expression from the plastid genome by a synthetic riboswitch. Proc Natl Acad Sci U S A.107(14):6204-9. PMCID: 2852001.
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  7. Error fetching PMID 19416889: [liu]
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  18. Error fetching PMID 19494908: [tokuriki]
  19. Error fetching PMID 19578359: [eldar]
All Medline abstracts: PubMed HubMed
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