Smolke:Reprints

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(Refereed Publications)
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==Reviewed Journal Publications==
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==Refereed Publications==
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<biblio>
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# Wei KY, Chen YY, Smolke CD. 2012. A yeast-based rapid prototype platform for gene-control elements in mammalian cells. Biotechnol. Bioeng. doi: 10.1002/bit.24792.
-
#smolke7 pmid=20010584
+
# Kennedy AB, Liang JC, Smolke CD. 2012. A versatile cis-blocking and trans-activation strategy for ribozyme characterization. Nuc. Acids Res. DOI: 10.1093/nar/gks1036 [http://nar.oxfordjournals.org/content/early/2012/11/15/nar.gks1036.long link]
-
#smolke6 pmid=19478174
+
# Michener JK, Nielsen J, Smolke CD. 2012. Identification and treatment of heme depletion attributed to overexpression of a lineage of evolved P450 monooxygenases. Proc. Natl. Acad. Sci. USA. DOI: 10.1073/pnas.1212287109 [http://www.pnas.org/content/109/47/19504.long link]
-
#beisel2 pmid=19381267
+
# Liang JC, Chang AL, Kennedy AB, Smolke CD. 2012. A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity. Nuc. Acids Res. 40: e154. [http://nar.oxfordjournals.org/content/40/20/e154.full link]
-
#win5 pmid=19318211
+
# Michener JK, Smolke CD. 2012. High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch. Metab. Eng. 14: 306-16. [http://www.sciencedirect.com/science/article/pii/S109671761200047X link]
-
#hoff pmid=19184988
+
# Chen YY, Galloway KE, Smolke CD. 2012. Synthetic biology: advancing biological frontiers by building synthetic systems. Genome Biol. 13: 240. [http://genomebiology.com/2012/13/2/240/ link]
-
#bayer2 pmid=19118500
+
# Chang AL, Wolf JJ, Smolke CD. 2012. Synthetic RNA switches as a tool for temporal and spatial control over gene expression. Curr. Opin. Biotechnol. 23: 679-88. [http://www.sciencedirect.com/science/article/pii/S0958166912000171 link]
-
#beisel pmid=18956013
+
# Siddiqui MS, Thodey K, Trenchard I, Smolke CD. 2012. Advancing secondary metabolite biosynthesis in yeast with synthetic biology tools. FEMS Yeast Research. 12: 144-70. [http://onlinelibrary.wiley.com/doi/10.1111/j.1567-1364.2011.00774.x/full link]
-
#win4 pmid=18927397
+
# Chen YY, Smolke CD. 2011. From DNA to targeted therapeutics: bringing synthetic biology to the clinic. Sci. Transl. Med. 3: 106ps42. [http://stm.sciencemag.org/content/3/106/106ps42.full link]
-
#hawkins2 pmid=18690217
+
# Michener JK, Thodey K, Liang JC, Smolke CD. 2012. Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways. Metab. Eng. 14: 212-22. [http://www.sciencedirect.com/science/article/pii/S1096717611000942 link]
-
#win2 pmid=17709748
+
# Liang JC, Bloom RJ, Smolke CD. 2011. Engineering biological systems with engineered RNA molecules. Mol. Cell. 43: 915-26. [http://www.sciencedirect.com/science/article/pii/S1097276511006447 link]
-
#win pmid=17038331
+
# Babiskin AH, Smolke CD. 2011. Synthetic RNA modules for fine-tuning gene expression levels in yeast by modulating RNase III activity. Nuc. Acids Res. 39: 8651-64. [http://nar.oxfordjournals.org/content/39/19/8651.long link]
-
#hawkins pmid=16524886
+
# Smolke CD, Silver PA. 2011. Informing biological design by integration of systems and synthetic biology. Cell. 144: 855-9. [http://www.sciencedirect.com/science/article/pii/S0092867411001723 link]
-
#pfleger pmid=16845378
+
# Babiskin AH, Smolke CD. 2011. Engineering ligand-responsive RNA controllers in yeast through the assembly of RNase III tuning modules. Nuc. Acids Res. 39: 5299-311. [http://nar.oxfordjournals.org/content/early/2011/02/25/nar.gkr090.full link]
-
#bayer pmid=15723047
+
# Babiskin AH, Smolke CD. 2011. A synthetic library of RNA control modules for predictable tuning of gene expression in yeast. Mol. Sys. Biol. 7:471. [http://www.nature.com/msb/journal/v7/n1/full/msb20114.html link]
-
#isaacs pmid=15765083
+
# Beisel CL, Chen YY, Culler SJ, Hoff KG, Smolke CD. 2010. Design of small molecule-responsive miRNAs based on structural requirements for Drosha processing. Nuc. Acids Res. 39: 2981-94. [http://nar.oxfordjournals.org/content/early/2010/12/11/nar.gkq954.full link]
-
#smolke1 pmid=12402322
+
# Culler SJ, Hoff KG, Smolke CD. 2010. Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins. Science. 330: 1251-5. Perspective: Cell biology. The case for RNA. 330: 1185-6. [http://www.sciencemag.org/content/330/6008/1251.full link]
-
#smolke2 pmid=11948448
+
# Chen YY, Jensen MC, Smolke CD. 2010. Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems. Proc. Natl. Acad. Sci. USA. 107: 8531-6. [http://www.pnas.org/content/early/2010/04/23/1001721107.abstract link]
-
#smolke3 pmid=11778879
+
# Culler SJ, Hoff KG, Voelker RB, Berglund JA, Smolke CD. 2010. Feature Article: Functional selection and systematic analysis of intronic splicing elements identifies active sequence motifs and associated splicing factors. Nuc. Acids Res. 38: 5152-65. [http://nar.oxfordjournals.org/content/38/15/5152.full link]
-
#smolke4 pmid=11676567
+
# Hoff KG, Culler SJ, Nguyen PQ, McGuire RM, Silberg JJ, Smolke CD. 2009. In vivo fluorescent detection of Fe-S clusters coordinated by human GRX2. Chem. Biol. 16: 1299-308. Commentary: Lights on iron-sulfur clusters. 16: 1213-4. [http://www.sciencedirect.com/science/article/pii/S1074552109004025 link]
-
#smolke5 pmid=11097920
+
# Beisel CL, Smolke CD. 2009. Design principles for riboswitch function. PLoS Comp. Biol. 5: e1000363. [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000363 link]
-
</biblio>
+
# Win MN, Liang JC, Smolke CD. 2009. Frameworks for programming biological function through RNA parts and devices. Chem. Biol. 16: 298-310. [http://www.sciencedirect.com/science/article/pii/S1074552109000775 link]
 +
# Bayer TS, Hoff KG, Beisel CL, Lee JJ, Smolke CD. 2009. Synthetic control of a fitness tradeoff in yeast nitrogen metabolism. J. Biol. Eng. 3: 1. [http://www.jbioleng.org/content/3/1/1 link]
 +
# Hoff KG, Goodlitt R, Li R, Smolke CD, Silberg JJ. 2009. Fluorescence detection of a protein-bound 2Fe2S cluster. Chembiochem. 10: 667-70. [http://onlinelibrary.wiley.com/doi/10.1002/cbic.200800747/full link]
 +
# Beisel CL, Bayer TS, Hoff KG, Smolke CD. 2008. Model-guided design of ligand-regulated RNAi for programmable control of gene expression. Mol. Sys. Biol. 4: 224. News and Views: Small hairpin RNA as a small molecule sensor. 4: 227. [http://www.nature.com/msb/journal/v4/n1/full/msb200862.html link]
 +
# Hawkins KM, Smolke CD. 2008. Cover article: Production of benzylisoquinoline alkaloids in Saccharomyces cerevisiae. Nat. Chem. Biol. 4: 564-73. News and Views: From yeast to alkaloids. 4: 524-5. [http://www.nature.com/nchembio/journal/v4/n9/full/nchembio.105.html link]
 +
# Win MN, Smolke CD. 2008. Higher-order cellular information processing with synthetic RNA devices. Science. 322: 456-60. Perspective: Cell biology. RNA computing in a living cell. 322: 387-8. (Additional detail on data processing and raw data is provided [[Media:Fulldata.pdf|here]] and as an E-letter attached to this article.) [http://www.sciencemag.org/content/322/5900/456.full link]
 +
# Win MN, Smolke CD. 2007. From the cover: A modular and extensible RNA-based gene-regulatory platform for engineering cellular function. Proc. Natl. Acad. Sci. USA. 104: 14283-8. Commentary: Targeted cleavage: tuneable cis-cleaving ribozymes. 104: 14881-2. Erratum: Proc. Natl. Acad. Sci. USA. 2009. 106: 15514. (An early online correction was published [http://hdl.handle.net/1721.1/45668 here].) [http://www.pnas.org/content/104/36/14283.abstract link]
 +
# Win MN, Klein JS, Smolke CD. 2006. Codeine-binding RNA aptamers and rapid determination of their binding constants using a direct coupling surface plasmon resonance assay. Nuc. Acids Res. 34: 5670-82. [http://nar.oxfordjournals.org/content/34/19/5670.long link]
 +
# Pfleger BF, Pitera DJ, Smolke CD, Keasling JD. 2006. Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes. Nat. Biotech. 24: 1027-32. [http://www.nature.com/nbt/journal/v24/n8/full/nbt1226.html link]
 +
# Hawkins KM, Smolke CD. 2006. The regulatory roles of the galactose permease and kinase in the induction response of the GAL network in Saccharomyces cerevisiae. J. Biol. Chem. 281: 13485-92. [http://www.jbc.org/content/281/19/13485.long link]
 +
# Bayer TS, Smolke CD. 2005. Programmable, ligand-controlled riboregulators of eukaryotic gene expression. Nat. Biotech. 23: 337-43. News and Views: Plug and play with RNA. 23: 306-7. [http://www.nature.com/nbt/journal/v23/n3/full/nbt1069.html link]
 +
# Smolke CD, Keasling JD. 2002. Effect of gene location, mRNA secondary structures, and RNase sites on expression of two genes in an engineered operon. Biotech. Bioeng. 80: 762-76. [http://onlinelibrary.wiley.com/doi/10.1002/bit.10434/abstract link]
 +
# Smolke CD, Keasling JD. 2002. Effect of copy number and mRNA processing and stabilization on transcript and protein levels from an engineered dual-gene operon. Biotech. Bioeng. 78: 412-24. [http://onlinelibrary.wiley.com/doi/10.1002/bit.10218/abstract link]
 +
# Smolke CD, Khlebnikov A, Keasling JD. 2001. Effects of transcription induction homogeneity and transcript stability on expression of two genes in a constructed operon. Appl. Micro. Biotech. 57: 689-96. [http://www.springerlink.com/content/ranhuv18kx33p9qx/ link]
 +
# Smolke CD, Martin VJJ, Keasling JD. 2001. Controlling the metabolic flux through the carotenoid pathway using directed mRNA processing and stabilization. Met. Eng. 3: 313-21. [http://www.sciencedirect.com/science/article/pii/S1096717601901946 link]
 +
# Smolke CD, Carrier TA, Keasling JD. 2000. Coordinated, differential expression of two genes through directed mRNA cleavage and stabilization by secondary structures. Appl. Environ. Microbiol. 66: 5399-405. [http://aem.asm.org/content/66/12/5399.full link]
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<font color="red"><b>Please Note:</b></font> <br>
+
==Non-Refereed Publications==
-
An early online correction to (PNAS. 2007. 104:14283-8) has been published [http://hdl.handle.net/1721.1/45668 here].  We will add the additional PMID  above once PNAS has processed the correction.<br>
+
-
Additional detail on data processing and raw data for (Science. 2008. 322:456-60.) is provided [[Media:Fulldata.pdf|here]].
+
-
==Non-Peer-Reviewed Publications==
+
# Smolke CD, Tyo KE. 2012. Synthetic biology: Emerging methodologies to catalyze the metabolic engineering design cycle. Met. Eng. [http://www.sciencedirect.com/science/article/pii/S1096717612000341 link]
-
 
+
# Thodey K, Smolke CD. 2011. Cell Biology. Bringing it together with RNA. Science. 333: 412-3. [http://www.sciencemag.org/content/333/6041/412.full link]
-
<biblio>
+
# Smolke CD. 2009. Building outside of the box: iGEM and the BioBricks Foundation. Nat. Biotech. 27:1099-102. [http://www.nature.com/nbt/journal/v27/n12/full/nbt1209-1099.html link]
-
#win3 pmid=18059640
+
# Smolke CD. 2009. Cell Biology. It’s the DNA that counts. Science. 324: 1156-7. [http://www.sciencemag.org/content/324/5931/1156.full link]
-
#baker pmid=16711359
+
# Win MN, Smolke CD. 2007. RNA as a versatile and powerful platform for engineering genetic regulatory tools. Biotechnology and Genetic Engineering Reviews. 24: 311-46.
-
</biblio>
+
# Baker D, Church G, Collins J, Endy D, Jacobson J, Keasling J, Modrich P, Smolke C, Weiss R. 2006. Engineering life: building a Fab for biology. Scientific American. 294: 44-51.
-
#Smolke, C. 2005. [http://eands.caltech.edu/articles/LXVII4/Smolke%20Feature%20in%20Spreads.pdf Molecular switches for cellular sensors]. ''Engineering and Applied Science'' 4, 28-37
+
# Martin VJJ, Smolke CD, Keasling JD. 2002. Redesigning cells for the production of complex organic molecules. ASM News. 68: 336-43. [http://newsarchive.asm.org/jul02/feature3.asp link]
-
#Martin, V.J.J., Smolke, C.D., Keasling, J.D. (2002) [http://newsarchive.asm.org/jul02/feature3.asp Redesigning cells for the production of complex organic molecules]. ''ASM News'' 68, 336-343.
+
==Books and Book Chapters==
==Books and Book Chapters==
-
#Smolke, C.D., editor (2009) Handbook for Metabolic Pathway Engineering. San Diego: CRC Press. '''In press.'''
+
# Liang JC, Smolke CD. 2012. Rational design and tuning of ribozyme-based devices. In: Hartig J, editor. Methods in Molecular Biology. 848:439-54. [http://www.springerprotocols.com/Full/doi/10.1007/978-1-61779-545-9_27?encCode=T0lCOjcyXzktNTQ1LTk3NzE2LTEtODc5&tokenString=NgevSbxhzQ/5JDUFp0DUPg== link]
-
#Smolke, C.D., Martin, V.J.J., Keasling, J.D. (2004) Tools for metabolic engineering in Escherichia coli. In: Baneyx, F., editor. Expression Technologies. U.K.: Horizon Scientific Press.
+
# Win MN,  Liang JC, Smolke CD. 2010. Frameworks for programming RNA devices. In: Mayer G, editor. The Chemical Biology of Nucleic Acids. U.K.: John Wiley & Sons, Ltd. pp. 323-38. [http://onlinelibrary.wiley.com/doi/10.1002/9780470664001.ch15/summary link]
 +
# Win MN, Smolke CD. 2009. Regulating gene expression through engineered RNA technologies. In: Smolke CD, editor. Handbook for Metabolic Pathway Engineering: Tools and Applications. San Diego: CRC Press.  
 +
# Smolke CD, Martin VJJ, Keasling JD. 2004. Tools for metabolic engineering in Escherichia coli. In: Baneyx F, editor. Protein Expression Technologies: Current Status and Future Trends. U.K.: Horizon Scientific Press.
 +
 
 +
==Edited Works in Print==
 +
# Smolke CD, editor. 2009. Handbook for Metabolic Pathway Engineering: Fundamentals (volume I). San Diego: CRC Press. [http://books.google.com/books/about/The_Metabolic_Pathway_Engineering_Handbo.html?id=wzAPgK1ulBQC Google Books] [http://www.amazon.com/The-Metabolic-Pathway-Engineering-Handbook/dp/1439802963 Amazon]
 +
# Smolke CD, editor. 2009. Handbook for Metabolic Pathway Engineering: Tools and Applications (volume II). San Diego: CRC Press. [http://books.google.com/books/about/The_Metabolic_Pathway_Engineering_Handbo.html?id=zCqHswQYAfgC Google Books] [http://www.amazon.com/The-Metabolic-Pathway-Engineering-Handbook/dp/1420077651 Amazon]

Revision as of 02:49, 3 December 2012

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Publications

Contents


Refereed Publications

  1. Wei KY, Chen YY, Smolke CD. 2012. A yeast-based rapid prototype platform for gene-control elements in mammalian cells. Biotechnol. Bioeng. doi: 10.1002/bit.24792.
  2. Kennedy AB, Liang JC, Smolke CD. 2012. A versatile cis-blocking and trans-activation strategy for ribozyme characterization. Nuc. Acids Res. DOI: 10.1093/nar/gks1036 link
  3. Michener JK, Nielsen J, Smolke CD. 2012. Identification and treatment of heme depletion attributed to overexpression of a lineage of evolved P450 monooxygenases. Proc. Natl. Acad. Sci. USA. DOI: 10.1073/pnas.1212287109 link
  4. Liang JC, Chang AL, Kennedy AB, Smolke CD. 2012. A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity. Nuc. Acids Res. 40: e154. link
  5. Michener JK, Smolke CD. 2012. High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch. Metab. Eng. 14: 306-16. link
  6. Chen YY, Galloway KE, Smolke CD. 2012. Synthetic biology: advancing biological frontiers by building synthetic systems. Genome Biol. 13: 240. link
  7. Chang AL, Wolf JJ, Smolke CD. 2012. Synthetic RNA switches as a tool for temporal and spatial control over gene expression. Curr. Opin. Biotechnol. 23: 679-88. link
  8. Siddiqui MS, Thodey K, Trenchard I, Smolke CD. 2012. Advancing secondary metabolite biosynthesis in yeast with synthetic biology tools. FEMS Yeast Research. 12: 144-70. link
  9. Chen YY, Smolke CD. 2011. From DNA to targeted therapeutics: bringing synthetic biology to the clinic. Sci. Transl. Med. 3: 106ps42. link
  10. Michener JK, Thodey K, Liang JC, Smolke CD. 2012. Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways. Metab. Eng. 14: 212-22. link
  11. Liang JC, Bloom RJ, Smolke CD. 2011. Engineering biological systems with engineered RNA molecules. Mol. Cell. 43: 915-26. link
  12. Babiskin AH, Smolke CD. 2011. Synthetic RNA modules for fine-tuning gene expression levels in yeast by modulating RNase III activity. Nuc. Acids Res. 39: 8651-64. link
  13. Smolke CD, Silver PA. 2011. Informing biological design by integration of systems and synthetic biology. Cell. 144: 855-9. link
  14. Babiskin AH, Smolke CD. 2011. Engineering ligand-responsive RNA controllers in yeast through the assembly of RNase III tuning modules. Nuc. Acids Res. 39: 5299-311. link
  15. Babiskin AH, Smolke CD. 2011. A synthetic library of RNA control modules for predictable tuning of gene expression in yeast. Mol. Sys. Biol. 7:471. link
  16. Beisel CL, Chen YY, Culler SJ, Hoff KG, Smolke CD. 2010. Design of small molecule-responsive miRNAs based on structural requirements for Drosha processing. Nuc. Acids Res. 39: 2981-94. link
  17. Culler SJ, Hoff KG, Smolke CD. 2010. Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins. Science. 330: 1251-5. Perspective: Cell biology. The case for RNA. 330: 1185-6. link
  18. Chen YY, Jensen MC, Smolke CD. 2010. Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems. Proc. Natl. Acad. Sci. USA. 107: 8531-6. link
  19. Culler SJ, Hoff KG, Voelker RB, Berglund JA, Smolke CD. 2010. Feature Article: Functional selection and systematic analysis of intronic splicing elements identifies active sequence motifs and associated splicing factors. Nuc. Acids Res. 38: 5152-65. link
  20. Hoff KG, Culler SJ, Nguyen PQ, McGuire RM, Silberg JJ, Smolke CD. 2009. In vivo fluorescent detection of Fe-S clusters coordinated by human GRX2. Chem. Biol. 16: 1299-308. Commentary: Lights on iron-sulfur clusters. 16: 1213-4. link
  21. Beisel CL, Smolke CD. 2009. Design principles for riboswitch function. PLoS Comp. Biol. 5: e1000363. link
  22. Win MN, Liang JC, Smolke CD. 2009. Frameworks for programming biological function through RNA parts and devices. Chem. Biol. 16: 298-310. link
  23. Bayer TS, Hoff KG, Beisel CL, Lee JJ, Smolke CD. 2009. Synthetic control of a fitness tradeoff in yeast nitrogen metabolism. J. Biol. Eng. 3: 1. link
  24. Hoff KG, Goodlitt R, Li R, Smolke CD, Silberg JJ. 2009. Fluorescence detection of a protein-bound 2Fe2S cluster. Chembiochem. 10: 667-70. link
  25. Beisel CL, Bayer TS, Hoff KG, Smolke CD. 2008. Model-guided design of ligand-regulated RNAi for programmable control of gene expression. Mol. Sys. Biol. 4: 224. News and Views: Small hairpin RNA as a small molecule sensor. 4: 227. link
  26. Hawkins KM, Smolke CD. 2008. Cover article: Production of benzylisoquinoline alkaloids in Saccharomyces cerevisiae. Nat. Chem. Biol. 4: 564-73. News and Views: From yeast to alkaloids. 4: 524-5. link
  27. Win MN, Smolke CD. 2008. Higher-order cellular information processing with synthetic RNA devices. Science. 322: 456-60. Perspective: Cell biology. RNA computing in a living cell. 322: 387-8. (Additional detail on data processing and raw data is provided here and as an E-letter attached to this article.) link
  28. Win MN, Smolke CD. 2007. From the cover: A modular and extensible RNA-based gene-regulatory platform for engineering cellular function. Proc. Natl. Acad. Sci. USA. 104: 14283-8. Commentary: Targeted cleavage: tuneable cis-cleaving ribozymes. 104: 14881-2. Erratum: Proc. Natl. Acad. Sci. USA. 2009. 106: 15514. (An early online correction was published here.) link
  29. Win MN, Klein JS, Smolke CD. 2006. Codeine-binding RNA aptamers and rapid determination of their binding constants using a direct coupling surface plasmon resonance assay. Nuc. Acids Res. 34: 5670-82. link
  30. Pfleger BF, Pitera DJ, Smolke CD, Keasling JD. 2006. Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes. Nat. Biotech. 24: 1027-32. link
  31. Hawkins KM, Smolke CD. 2006. The regulatory roles of the galactose permease and kinase in the induction response of the GAL network in Saccharomyces cerevisiae. J. Biol. Chem. 281: 13485-92. link
  32. Bayer TS, Smolke CD. 2005. Programmable, ligand-controlled riboregulators of eukaryotic gene expression. Nat. Biotech. 23: 337-43. News and Views: Plug and play with RNA. 23: 306-7. link
  33. Smolke CD, Keasling JD. 2002. Effect of gene location, mRNA secondary structures, and RNase sites on expression of two genes in an engineered operon. Biotech. Bioeng. 80: 762-76. link
  34. Smolke CD, Keasling JD. 2002. Effect of copy number and mRNA processing and stabilization on transcript and protein levels from an engineered dual-gene operon. Biotech. Bioeng. 78: 412-24. link
  35. Smolke CD, Khlebnikov A, Keasling JD. 2001. Effects of transcription induction homogeneity and transcript stability on expression of two genes in a constructed operon. Appl. Micro. Biotech. 57: 689-96. link
  36. Smolke CD, Martin VJJ, Keasling JD. 2001. Controlling the metabolic flux through the carotenoid pathway using directed mRNA processing and stabilization. Met. Eng. 3: 313-21. link
  37. Smolke CD, Carrier TA, Keasling JD. 2000. Coordinated, differential expression of two genes through directed mRNA cleavage and stabilization by secondary structures. Appl. Environ. Microbiol. 66: 5399-405. link

Non-Refereed Publications

  1. Smolke CD, Tyo KE. 2012. Synthetic biology: Emerging methodologies to catalyze the metabolic engineering design cycle. Met. Eng. link
  2. Thodey K, Smolke CD. 2011. Cell Biology. Bringing it together with RNA. Science. 333: 412-3. link
  3. Smolke CD. 2009. Building outside of the box: iGEM and the BioBricks Foundation. Nat. Biotech. 27:1099-102. link
  4. Smolke CD. 2009. Cell Biology. It’s the DNA that counts. Science. 324: 1156-7. link
  5. Win MN, Smolke CD. 2007. RNA as a versatile and powerful platform for engineering genetic regulatory tools. Biotechnology and Genetic Engineering Reviews. 24: 311-46.
  6. Baker D, Church G, Collins J, Endy D, Jacobson J, Keasling J, Modrich P, Smolke C, Weiss R. 2006. Engineering life: building a Fab for biology. Scientific American. 294: 44-51.
  7. Martin VJJ, Smolke CD, Keasling JD. 2002. Redesigning cells for the production of complex organic molecules. ASM News. 68: 336-43. link

Books and Book Chapters

  1. Liang JC, Smolke CD. 2012. Rational design and tuning of ribozyme-based devices. In: Hartig J, editor. Methods in Molecular Biology. 848:439-54. link
  2. Win MN, Liang JC, Smolke CD. 2010. Frameworks for programming RNA devices. In: Mayer G, editor. The Chemical Biology of Nucleic Acids. U.K.: John Wiley & Sons, Ltd. pp. 323-38. link
  3. Win MN, Smolke CD. 2009. Regulating gene expression through engineered RNA technologies. In: Smolke CD, editor. Handbook for Metabolic Pathway Engineering: Tools and Applications. San Diego: CRC Press.
  4. Smolke CD, Martin VJJ, Keasling JD. 2004. Tools for metabolic engineering in Escherichia coli. In: Baneyx F, editor. Protein Expression Technologies: Current Status and Future Trends. U.K.: Horizon Scientific Press.

Edited Works in Print

  1. Smolke CD, editor. 2009. Handbook for Metabolic Pathway Engineering: Fundamentals (volume I). San Diego: CRC Press. Google Books Amazon
  2. Smolke CD, editor. 2009. Handbook for Metabolic Pathway Engineering: Tools and Applications (volume II). San Diego: CRC Press. Google Books Amazon
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