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  • 03:21, 7 August 2008 (hist) (diff) Nm MichaelsSNoteBook/2008-8-7(New page: == Correlation Stuff == 0. RMSD 1. Rotamericity 2. Chi1 recov (Procede) 3. Energy (Procede) 4. Chi1 recov (Rosetta) 5. Energy (Rosetta) 6. Energy Design (Rosetta) 7. SeqRecov (Rosetta)) (top)
  • 03:19, 7 August 2008 (hist) (diff) User:Michael Schneider(top)
  • 03:18, 7 August 2008 (hist) (diff) User:Michael Schneider
  • 17:02, 17 July 2008 (hist) (diff) N MichaelsSNoteBook/2008-7-17(New page: == Last Meeting with Amy == Figure 1 Add Labels for Avg and Best (upper left, like a legend) Figure 2 Repack energies: Minimized (E2-100) Procede panel (a) and Rosetta panel (b) repac...) (top)
  • 11:27, 10 July 2008 (hist) (diff) N MichaelsSNoteBook/2008-7-10(New page: Figures to make: Figure 1 A) Rotamericity (NMR ave - X-ray diff) B) Repacking (NMR ave - X-ray diff) C) Rosetta cluster energy repacking D) Procede cluster energy (stre) repacking Fig...) (top)
  • 15:56, 8 May 2008 (hist) (diff) N MichaelsSNoteBook/2008-5-8(New page: =05/08/08= Today was kinda good :). Made plots for the energy decomposiotion for the fixed backbone design case. Both plots for no min and E2 100 backbone mit were made. Seems, that th...) (top)
  • 11:03, 6 May 2008 (hist) (diff) N MichaelsSNoteBook/2008-5-6(New page: == evaluation script == rewritten the evalutation script. outputs now the following files: "rosettaDesignEnergyDecompositionAllEnergies_" + xrayFileKey + "_" + nmrFileKey + ".txt" i...) (top)
  • 17:58, 18 April 2008 (hist) (diff) MichaelsSNoteBook/2008-4-18(SCADS) (top)
  • 17:57, 18 April 2008 (hist) (diff) MichaelsSNoteBook/2008-4-18(rosetta design)
  • 17:57, 18 April 2008 (hist) (diff) N MichaelsSNoteBook/2008-4-18(A)
  • 18:02, 9 April 2008 (hist) (diff) N MichaelsSNoteBook/2008-4-9(New page: ==04/09/08== ... done something ^^. Read the interesting crystallography review, maybe something that can be cited. Also startet the calculations of structures with core residue fract...) (top)
  • 18:04, 7 April 2008 (hist) (diff) N MichaelsSNoteBook/2008-4-7(New page: == 04/07/08 == So focucing works. I got through to papers, which are definetly worth citing, showing that NMR and X-ray are complementary methods and it is often not possible to get NMR sp...) (top)
  • 13:22, 4 April 2008 (hist) (diff) N MichaelsSNoteBook/2008-4-4(New page: ==04/04/08== Okay, time to geht on full throttle !!! I guess I kinda in the writing process now. Plan till monday night: Read papers, on the bus, at the tournament, sunday at home, mon...) (top)
  • 17:58, 3 April 2008 (hist) (diff) N MichaelsSNoteBook/2008-4-3(New page: ==04/03/2008== Not so much done today ... I really should motivate myself a little bid more :). Quality scores by just using phi-psi in procheck increases the overall z-score slightly. ...) (top)
  • 17:31, 1 April 2008 (hist) (diff) MichaelsSNoteBook/2008-4-1(top)
  • 17:30, 1 April 2008 (hist) (diff) N MichaelsSNoteBook/2008-4-1(New page: ==April 1st 2008== As usuall, meeting with Amy was pretty helpful. I have a couple of new tasks for the next couple of days. I. Search in the liturature for every X-ray vs. NMR results...)
  • 18:12, 21 March 2008 (hist) (diff) N MichaelsSNoteBook/2008-3-21(New page: == Collecting results and thing about several ways of plotting == The scatter plots, like Karl suggested, seem to be very helpful. Since we need no normalization for our data that has the...) (top)
  • 17:06, 13 March 2008 (hist) (diff) N MichaelsSNoteBook/2008-3-13(New page: == Thursday 03/13/08 == Not so much done today ... Finally I moved to my new desk ^^. Ive collected the data of the last 5 structure pairs, so far no obvious errors so I can start the...) (top)
  • 17:51, 12 March 2008 (hist) (diff) MichaelsSNoteBook/2008-3-12(top)
  • 17:49, 12 March 2008 (hist) (diff) MichaelsSNoteBook/2008-3-12

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