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- 09:44, 3 May 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 (→Documentation) (top)
- 09:44, 3 May 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3
- 02:07, 3 May 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 (→Progress)
- 01:56, 3 May 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3
- 01:42, 3 May 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 (→Code)
- 01:39, 3 May 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 (New page: ==Annotation== *The following code combines the work that both Cynthia and I have done to return mesh terms (all mesh terms as well as just the major mesh terms) that are derived from two ...)
- 00:40, 1 May 2007 (hist) (diff) Harvard:Biophysics 101/2007/04/26
- 00:38, 1 May 2007 (hist) (diff) User:RCharalel (→Biophysics 101) (top)
- 00:37, 1 May 2007 (hist) (diff) User:RCharalel (→Biophysics 101)
- 00:36, 1 May 2007 (hist) (diff) User:RCharalel (→Biophysics 101)
- 00:35, 1 May 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-1 (→Update) (top)
- 00:34, 1 May 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-1 (→Update)
- 00:34, 1 May 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-1 (New page: ==Update== *I have been out of town since last Thursday's class for a revisit weekend and did not have email/computer access there. So, unfortunately, I did not get as much to work on thi...)
- 00:05, 1 May 2007 (hist) (diff) Harvard:Biophysics 101/2007/04/26
- 23:45, 25 April 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-26 (New page: ==Comments== *I think I now have all of the necessary pieces of code to create a program, which will parse the XML of any returned OMIM entry to retrieve the PMIDs, then search these throu...) (top)
- 23:41, 25 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/04/19
- 00:36, 24 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/04/19
- 00:35, 24 April 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-24 (New page: ==Tasks Accomplished== *Grasped a much better understanding of XML parsing. *Finished code to parse OMIM records and return all Pubmed ID numbers (without errors). *Wrote code to search Pu...) (top)
- 00:27, 24 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 (→Tasks for Tuesday and Thursday) (top)
- 00:26, 24 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 (→Program So Far)
- 00:25, 24 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 (→Program So Far)
- 00:25, 24 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19
- 00:22, 24 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/04/19
- 00:21, 24 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/04/19
- 22:19, 18 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 (→Issues)
- 22:16, 18 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 (→Issues)
- 22:00, 18 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 (→What I Plan to Contribute) (top)
- 22:00, 18 April 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 (New page: ==Issues== *I think I have an appropriate algorithm for deriving keywords and printing some PMIDs. However, I keep getting this weird error message that says my spacing is incorrect and w...)
- 00:34, 17 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 (→Notes)
- 00:10, 17 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 (→What I Plan to Contribute)
- 00:07, 17 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-17 (top)
- 00:06, 17 April 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-17 (New page: Applications: Our program can be used for a variety of applications. In particular, it is able to locate single nucleotide polymorphisms (SNPs) in an entered DNA sequence and return any...)
- 16:02, 13 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/04/12
- 16:00, 13 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/04/12
- 15:59, 13 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/04/12
- 15:58, 13 April 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 (New page: ==What I Plan to Contribute== *I am currently writing up how to use our program and separately, how it works. It is almost done and will be completed by Tuesday. *I will write code to ge...)
- 15:48, 13 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/04/10 (→What we need)
- 11:31, 5 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Project (→OMIM)
- 11:30, 5 April 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-5 (→OMIM to Review Articles in Pubmed) (top)
- 11:29, 5 April 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-5 (New page: ==OMIM to Review Articles in Pubmed== *The following is the code to return a list of review references for the disease returned through Xiaodi's code. <\pre> from Bio import PubMed fro...)
- 10:02, 18 March 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-20 (New page: ==Assignment== There are a number of steps to be taken in order to create a program that will achieve the requested functions and I think Xiaodi, Mike and Zach outline those beautifully. ...) (top)
- 09:54, 18 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20
- 23:23, 14 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 2)
- 23:21, 14 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 2)
- 23:20, 14 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 2)
- 23:20, 14 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 2)
- 22:50, 14 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 16:47, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 16:46, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:55, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:54, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:54, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:53, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:53, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:52, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:51, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:51, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:51, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:50, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:49, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15
- 15:49, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:48, 13 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (→Task 1)
- 15:48, 13 March 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 (New page: ==Task 1== *Manual analysis of provided sequence <pre> CACCCTCGCCAGTTACGAGCTGCCGAGCCGCTTCCTAGGCTCTCTGCGAATACGGACACG CATGCCACCCACAACAACTTTTTAAAAGAATCAGACGTGTGAAGGATTCTAT...)
- 20:16, 8 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-27 (→Notes) (top)
- 20:13, 8 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-27 (→Output of Program)
- 20:12, 8 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-27 (→Program Code)
- 16:09, 8 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Project (→Action)
- 16:04, 8 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Project (→Data Characterization and analysis)
- 16:01, 8 March 2007 (hist) (diff) Harvard:Biophysics 101/2007/Project (→Input Data)
- 00:34, 27 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-27
- 00:21, 27 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-27 (→Output of Program)
- 00:14, 27 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-27 (→Program Code)
- 00:14, 27 February 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-27 (New page: ==Program Code== s ==Output of Program== s)
- 22:11, 21 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (→Notes) (top)
- 21:55, 21 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (→Notes)
- 21:52, 21 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (→Output)
- 21:52, 21 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (→Output)
- 21:51, 21 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (→Script)
- 10:26, 20 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (→Notes)
- 10:25, 20 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (→Notes)
- 10:24, 20 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (→Notes)
- 10:24, 20 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (→Notes)
- 10:23, 20 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (→Output)
- 10:21, 20 February 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-20 (New page: == Script == #!/usr/bin/env python import os from Bio import GenBank, Seq from Bio.Seq import Seq,translate from Bio import Clustalw from Bio.Clustalw import MultipleAlignCL...)
- 01:35, 12 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-8 (top)
- 01:34, 12 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-8
- 01:33, 12 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-8
- 01:32, 12 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-8
- 01:29, 12 February 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-8 (New page: == Script == #!/usr/bin/env python from random import * mx=10 countH=[0,0,0,0,0,0,0,0,0] countT=[0,0,0,0,0,0,0,0,0] #Generation of list of 10,000 strings of 10 random coinflips and tal...)
- 10:18, 6 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-6 (→Assignment 1, due 2/6/07) (top)
- 10:18, 6 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-6 (→Assignment 1, due 2/6/07)
- 10:16, 6 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-6 (→Assignment 1, due 2/6/07)
- 10:15, 6 February 2007 (hist) (diff) Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-6
- 10:12, 6 February 2007 (hist) (diff) N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-2-6 (New page: ==Assignment 1, due 2/6/07== Code for Assignment (This code performs all requested changes to original code): #!/usr/bin/env python from Bio import GenBank, Seq from Bio.Seq import Seq,...)
- 21:47, 5 February 2007 (hist) (diff) User:RCharalel
- 13:58, 5 February 2007 (hist) (diff) Harvard:Biophysics 101/2007:People
- 13:55, 5 February 2007 (hist) (diff) User:RCharalel
- 13:55, 5 February 2007 (hist) (diff) User:RCharalel
- 13:54, 5 February 2007 (hist) (diff) User:RCharalel
- 13:52, 5 February 2007 (hist) (diff) N User:RCharalel (New page: Name: Resmi Charalel)
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