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- 17:55, 9 April 2008 (hist) (diff) Beauchamp:AFNI
- 17:55, 9 April 2008 (hist) (diff) N Creating Standardized Surface Models (New page: 1) First, we create an AC-PC aligned version of the surface, as follows Find the AC-PC transform using the AFNI script @auto_tlrc (which calls various other programs) to compute a rigid t...) (top)
- 17:55, 9 April 2008 (hist) (diff) N Creating Cortical Surfaces (New page: == Automation == All of the steps below are contained in the scripts file /Volumes/data9/surface/scripts/@recon To run this command type, /Volumes/data9/surfaces/scripts/@recon ec subj...) (top)
- 17:54, 9 April 2008 (hist) (diff) N Beauchamp:AFNI (New page: http://afni.nimh.nih.gov/afni/ See use in Creating Cortical Surfaces and Creating Standardized Surface Models)
- 17:53, 9 April 2008 (hist) (diff) N Image:TA314 LBA45Mask.jpg (top)
- 17:53, 9 April 2008 (hist) (diff) N Image:TA314 LPreSMAMask.jpg (top)
- 17:52, 9 April 2008 (hist) (diff) N Image:TA314 minFA.jpg (top)
- 17:51, 9 April 2008 (hist) (diff) N Image:TA314 editcheckmode2.jpg (top)
- 17:50, 9 April 2008 (hist) (diff) N Image:TA314 BA44Mask.jpg (top)
- 17:50, 9 April 2008 (hist) (diff) N Image:TA314 VOIexample.jpg (top)
- 17:48, 9 April 2008 (hist) (diff) N Beauchamp:DetermineTract (New page: After your diffusion tensor data has been processed and whole-brain pathways have been computed, DTIQuery v1.1 allows regions to be drawn for interactive tractography. This is a great, f...)
- 17:47, 9 April 2008 (hist) (diff) N Beauchamp:InitialAutoVOIforIT (New page: DTI Query allows any number of cuboid VOIs to be used isolate fiber pathways Automatically specifying the center and extents of these VOIs is useful when you have lots of points derived ...) (top)
- 17:47, 9 April 2008 (hist) (diff) N Beauchamp:ProcessDiffTensImgData (New page: These steps show how to process DTI data acquired on the UT Philips 3T scanner == Create a 3d+time DWI BRIK from DICOM files == '''1) The first step is to reconstruct the raw diffusio...)
- 17:46, 9 April 2008 (hist) (diff) N Creating Standardized Surface Models New (New page: 1) First, we create an AC-PC aligned version of the surface, as follows Find the AC-PC transform using the AFNI script @auto_tlrc (which calls various other programs) to compute a rigid t...) (top)
- 17:46, 9 April 2008 (hist) (diff) N Beauchamp:CreateStndSurfModNew (New page: 1) First, we create an AC-PC aligned version of the surface, as follows Find the AC-PC transform using the AFNI script @auto_tlrc (which calls various other programs) to compute a rigid t...)
- 17:45, 9 April 2008 (hist) (diff) N Beauchamp:CreateStndSurfMod (New page: N.B. See also a newer version at Creating Standardized Surface Models New The first few steps in creating a standardized surface are accomplished by running @GroupAnalysis. The main s...) (top)
- 17:44, 9 April 2008 (hist) (diff) N Beauchamp:CreateAFNIBRIKfromMR (New page: == Converting DICOM Files to AFNI Files == DICOM is the standard file format for storing medical data. Typically each scan is saved in a unique folder and each file represents a single sl...)
- 17:44, 9 April 2008 (hist) (diff) N Beauchamp:NEWSoftInfo (New page: {{Beauchamp Lab Notebook Navigation Bar}} <br> <div style="padding: 8px; color: #000000; background-color: #ffffff; width: 730px; border: 2px solid #666666;"> == Updating AFNI == AFNI is...)
- 17:41, 9 April 2008 (hist) (diff) N Beauchamp:OLDSoftInfo (New page: == OLD == For the current version of these instructions, please click on http://openwetware.org/wiki/Beauchamp:Software_Installation Please use and modify this new page, not the instructio...) (top)
- 17:41, 9 April 2008 (hist) (diff) Beauchamp:Lab Notebook (→MRI)
- 17:40, 9 April 2008 (hist) (diff) Beauchamp:Lab Notebook (→MRI)
- 17:32, 9 April 2008 (hist) (diff) N Beauchamp:IfCortModExists (New page: == What if I have scanned a subject for whom a surface model already exists? == == Automation == All of the steps below are contained in the scripts file /Volumes/data9/surface/scripts/@...)
- 17:32, 9 April 2008 (hist) (diff) Beauchamp:Lab Notebook (→MRI)
- 17:30, 9 April 2008 (hist) (diff) N Beauchamp:UseCortSurfMod (New page: == Automation == All of the steps below are contained in the script file /Volumes/data9/surface/scripts/@finish TTo run this command type, /Volumes/data9/surfaces/scripts/@finish ec su...)
- 17:30, 9 April 2008 (hist) (diff) Beauchamp:Lab Notebook (→MRI)
- 17:28, 9 April 2008 (hist) (diff) N Beauchamp:CreateCortSurfMod (New page: == Automation == All of the steps below are contained in the scripts file /Volumes/data9/surface/scripts/@recon To run this command type, /Volumes/data9/surfaces/scripts/@recon ec subj...)
- 17:28, 9 April 2008 (hist) (diff) Beauchamp:Lab Notebook (→MRI)
- 13:51, 29 February 2008 (hist) (diff) N User talk:Molly A Bryan (top)
- 13:51, 29 February 2008 (hist) (diff) N User:Molly A Bryan (top)
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