Recent Changes

From OpenWetWare

Jump to: navigation, search

Track the most recent changes to the wiki on this page.

Below are the last 50 changes in the last 7 days, as of 10:59, 18 August 2017.
Show last 50 | 100 | 250 | 500 changes in last 1 | 3 | 7 | 14 | 30 days
Hide minor edits | Show bots | Hide anonymous users | Hide logged-in users | Hide my edits
Show new changes starting from 10:59, 18 August 2017
i
Limit to categories (separate with "|")  Any

18 August 2017

       10:45 Xu lab:Contact (diff; hist) . .  (-1) . . Peisheng Xu (Talk | contribs)
+      10:42 Xu lab‎ (3 changes) . . (+202) . . (Page history) [Peisheng Xu‎ (3×)]
       10:37 Xu lab:Research (diff; hist) . .  (+118) . . Peisheng Xu (Talk | contribs)
  N    06:55 IGEM:IISER-Pune-India/2009/Notebook/TB, or not TB?/Entry Base (diff; hist) . .  (+865) . . Avani Koparkar (Talk | contribs) (Autocreated Lab Notebook name=IGEM:IISER-Pune-India/2009/Notebook/TB, or not TB?/Entry Base, content from MediaWiki:IGEMEntryContentDefault)
  N    06:55 IGEM:IISER-Pune-India/2009/Notebook/TB, or not TB? (diff; hist) . .  (+1,595) . . Avani Koparkar (Talk | contribs) (Autocreated Lab Notebook name=IGEM:IISER-Pune-India/2009/Notebook/TB, or not TB?, content from MediaWiki:IGEMProjectContentDefault)
  N    06:55 IGEM:IISER-Pune-India/2009/Notebook (diff; hist) . .  (+75) . . Avani Koparkar (Talk | contribs) (Autocreated Lab Notebook name=IGEM:IISER-Pune-India/2009/Notebook, content from MediaWiki:NotebookContentDefault)

17 August 2017

+      18:28 (Upload log)‎ [Katie Pollard‎ (2×)]
  N    18:27 Gos (diff; hist) . .  (+1,180) . . Katie Pollard (Talk | contribs) (New page: 31 phylogenetic markers were identified by BLAST and HMM searches from the Global Ocean Survey read peptides. The marker sequences were then aligned and trimmed. '''Peptides''': 41,146,5...)
  N    18:26 MetagenomicPhylodiversity (diff; hist) . .  (+2,392) . . Katie Pollard (Talk | contribs) (New page: = Measuring phylogenetic diversity using metagenomic data = --Steven Kembel * General question is how we can measure phylogenetic diversity using metagenomic data. ...)
  N    18:26 Mechanistic models community assembly (diff; hist) . .  (+4,036) . . Katie Pollard (Talk | contribs) (New page: (These notes added mainly by James.) ===Overview=== With Jess Green I am developing a theoretical and mathematical underpinning for certain spatial patterns in ecology. In the first inst...)
  N    18:25 ReadsOnATree (diff; hist) . .  (+3,242) . . Katie Pollard (Talk | contribs) (New page: == Placing metagenomic reads on a reference phylogeny == This is a place to discuss the method for building phylogenies from metagenomic reads that I've been trying. === Individual gene ...)
  N    18:25 SARs (diff; hist) . .  (+1,758) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} <div style="width: 750px;padding-right: 25px; padding-left: 25px;font-family: Arial, Helvetica, sans-serif;font-size: 12px;margin-bottom: 30px;line-height: 18px;padding-top: 0px...)
  N    18:24 Simulation pipeline (diff; hist) . .  (+2,631) . . Katie Pollard (Talk | contribs) (New page: The simulation pipeline generates specific kinds of metagenomic data sets and alignments. Details about dependencies, how to use the script, what files are output, etc., are covered in th...)
  N    18:23 Developing phylogenetic methods (diff; hist) . .  (+918) . . Katie Pollard (Talk | contribs) (New page: (15 April 2009) These are notes for an ongoing project. Please let me know if you have suggestions.<br> -- Sam Riesenfeld I am working on developing a phylog...)
  N    18:23 PhyloPipeline (diff; hist) . .  (+3,580) . . Katie Pollard (Talk | contribs) (New page: == Availability and dependencies== The scripts are available as an archive. The data included with the scripts are the results of running AMPHORA on the HOT/ALOHA metagenomic data set. Do...)
  N    18:22 List of phylogenetic methods (diff; hist) . .  (+2,020) . . Katie Pollard (Talk | contribs) (New page: We are trying to compile here a list of methods, and ways to tweak methods, that we might want to compare using (at least) the simulated data. '''Methods to create alignments''' *Metagen...)
  N    18:22 Discussion on phylogenetic methods (diff; hist) . .  (+10,436) . . Katie Pollard (Talk | contribs) (New page: Major overhaul (15 April 2009): I reorganized the wiki pages on phylogenetic methods; the main page is Phylogenetic Methods, and this page is reserved for discussion. I have also bro...)
  N    18:21 Phylogenetic Methods (diff; hist) . .  (+2,167) . . Katie Pollard (Talk | contribs) (New page: Major overhaul (15 April 2009): I reorganized the wiki pages on phylogenetic methods, started a new page just for the discussion, and broke up the discussion page into several pages.<br> ...)
  N    18:21 Discussion on simulating metagenomic data (diff; hist) . .  (+9,174) . . Katie Pollard (Talk | contribs) (New page: Major overhaul (15 April 2009): I reorganized the wiki pages on simulations; the main page is Simulations of Metagenomic Data, and this page is reserved for discussion.<br> --[[User:S...)
  N    18:20 Action items for the simulations and analysis (diff; hist) . .  (+9,132) . . Katie Pollard (Talk | contribs) (New page: (Page created: Nov. 2009) ==Simulation code - Sam: I got these items== * ''Done.'' Output alignment of source seqs and ref seqs and as well as an alignment of reads and ref seqs. (Source...)
  N    18:19 Simulations of Metagenomic Data (diff; hist) . .  (+1,447) . . Katie Pollard (Talk | contribs) (New page: Major overhaul (15 April 2009): I reorganized the wiki pages on simulations of metagenomic data; all related pages should be linked to from this page.<br> --[[User:Samantha_Riesenfeld | S...)
  N    18:16 Survey of metagenomic data (diff; hist) . .  (+3,601) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} <div style="width: 750px;padding-right: 25px; padding-left: 25px;font-family: Arial, Helvetica, sans-serif;font-size: 12px;margin-bottom: 30px;line-height: 18px;padding-top: 0px...)
  N    18:16 Workflow Notes (diff; hist) . .  (+391) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} <div style="width: 750px;padding-right: 25px; padding-left: 25px;font-family: Arial, Helvetica, sans-serif;font-size: 12px;margin-bottom: 30px;line-height: 18px;padding-top: 0px...)
  N    18:16 Novelty Notes (diff; hist) . .  (+166) . . Katie Pollard (Talk | contribs) (New page: == Jonathan and Dongyings work on automated methods for IDing protein family novelty == Coming soon == Possible project on looking for unique pathways == Coming soon)
  N    18:15 Gene Family Notes (diff; hist) . .  (+38,156) . . Katie Pollard (Talk | contribs) (New page: == 100 genomes (Dongying Wu) == * Summary **Took 100 genomes (bacterial and archaea) ** Did all vs all blastp ** Identified protein families using MCL ** Annotated families according to e...)
  N    18:15 HMM Profile Building Notes (diff; hist) . .  (+1,824) . . Katie Pollard (Talk | contribs) (New page: <pre> 5/2/2009 I've picked 102 gene families with universality of 100, and build 102 hmm profiles. Here is the protocols: 1. get all the peptides for each family 2. use kalign to align ...)
  N    18:15 Oil Spill Brainstorm (diff; hist) . .  (+3,530) . . Katie Pollard (Talk | contribs) (New page: *Josh, May 31: I think that some of our methods and ideas could be easily adapted for investigating the effects of the Gulf of Mexico oil spill on marine microbes. There is a lot funding...)
  N    18:14 Tara Oceans Analysis Plans (diff; hist) . .  (+2,507) . . Katie Pollard (Talk | contribs) (New page: Tara Oceans Analysis Ideas * Prevalence of novel SFams (diverse families with no annotated function) across Tara sampling locations. ** Potentially correlate with annotated families and/...)
  N    18:14 Moore Notes 4 24 09-EisenCallWithCamera (diff; hist) . .  (+1,171) . . Katie Pollard (Talk | contribs) (New page: JE talked with Ilkay from Camera this PM they have been working on implementing some of our software within CAMERA, some as sort of stand alone apps and some as workflows and some apparen...)
  N    18:13 Moore Notes 11 25 08-EisenCallWithCamera (diff; hist) . .  (+337) . . Katie Pollard (Talk | contribs) (New page: Conference call to discuss CAMERA 11-25-08 2 PM CAMERA is turning software and algorithms into APIs They are using REST style services - services invoked using standard http get or other...)
  N    18:13 Moore Notes 11 19 08-EisenCallWithCamera (diff; hist) . .  (+204) . . Katie Pollard (Talk | contribs) (New page: Eisen had conversation with Gilna, et al from CAMERA at 4 PM on 11-19 Discussed two main issues * Getting iSEEM tools and products into CAMERA * Getting access to CAMERA General commitme...)
  N    18:13 Moore Notes CAMERA 4 18 08 (diff; hist) . .  (+2,754) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} iSEEM team went to visit CAMERA on 4/18/08 This was our Quarterly Meeting as well as a chance to interact with CAMERA = Visitors were = *Green Lab - Jessica Green, Liz Perry, ...)
  N    18:12 Moore Notes 12 16 08 (diff; hist) . .  (+2,229) . . Katie Pollard (Talk | contribs) (New page: Group Skype Chat * How to build phylogenetic trees for marker gene families with complete genomes plus metagenomic reads? ** KP emailed Bret Larget (waiting response) ** SR emailed Tandy ...)
  N    18:12 Moore Notes 12 2 08 (diff; hist) . .  (+360) . . Katie Pollard (Talk | contribs) (New page: Group skype conference call * Planning quarterly meeting ** Arrival times, logistics ** Presentations on previous work first (Wednesday 2-5pm) ** Project topic discussions second (Thursda...)
  N    18:12 Moore Notes 11 25 08 (diff; hist) . .  (+1,287) . . Katie Pollard (Talk | contribs) (New page: Phone call with Katie and Jessica Discussing the new private wiki Decision to do most things in the private system and then copy stuff over to the public page when needed For some things...)
  N    18:11 Moore Notes 11 18 08 (diff; hist) . .  (+3,197) . . Katie Pollard (Talk | contribs) (New page: <div style="width: 800px;border-top-width: 4px;border-bottom-width: 4px;border-top-style: solid;border-bottom-style: solid;border-top-color: #333333;border-right-color: #333333;border-bott...)
  N    18:11 Moore Notes 11 11 08 (diff; hist) . .  (+706) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} JG and KP Skype chat * Our lab members need UC Davis computer accounts ** Step 1: Get @ucdavis.edu emails for kerberos pwds ** Step 2: Get accounts on Genome Center clusters ...)
  N    18:11 Moore Notes 11 4 08 (diff; hist) . .  (+1,399) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} All Group Call * New personnel: Josh, Sam and Steve all started * OWW site ** Every one should add their photo and edit their text ** Steve Green will pick some photos of micr...)
  N    18:11 Moore Notes 10 28 08 (diff; hist) . .  (+1,452) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} PI Conference Call (JG, JE, KP) * OWW website ** calendar planning ** JE and OWW are still working on the private page * Update on Genographic project ** H. pylori papers (M....)
  N    18:11 Moore Notes 10 21 08 (diff; hist) . .  (+2,031) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} PI skype chat (JG, JE, KP) * OWW website: ** Steve still needs to *** fix calendar *** Transfer relevant information from Jonathan's wiki over to the openwetware page rather t...)
  N    18:10 Moore Notes 10 14 08 (diff; hist) . .  (+932) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} PI skype video chat (JG and KP) * OWW website: Steve will ** look into photo images from Dennis Kunkel ** add calendar (as a menu link) ** revise menu links: Transfer relevant...)
  N    18:10 Moore Notes 9 7 08 (diff; hist) . .  (+619) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} Group Conference Call (Pollard & Eisen labs) * First skype conference call. After some glitches, worked great for multiple party calls. * Progress Report * Genevieve Erwin (Po...)
  N    18:10 Moore Notes 9 30 08 (diff; hist) . .  (+811) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} Phone Conference Call (JG, JE, KP) * Website update ** Steve's html needs to be converted to media wiki (JE will send link) ** Steve will send billing info and an estimate to ...)
  N    18:09 Moore Notes 9 24 08 (diff; hist) . .  (+589) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} Conference Call (JG, JE, KP) * Tutorial: multiple alignment, sequence processing, etc. ** Srijak will start with a simple metagenomic data set ** Then, JG's PKS and 16S data *...)
  N    18:09 Moore Notes 9 17 08 (diff; hist) . .  (+1,410) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} PI iChat: JG, KP, JE * Openwetware website ** Pages: *** Home: logo and brief project summary *** Project: detailed project summary, links to subprojects *** People: photo of ...)
  N    18:09 Moore Notes 9 10 08 (diff; hist) . .  (+1,455) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} Full Group Conference Call (PIs plus lab members) * Update on Kepler work flow meeting with UCD and CAMERA ** CAMERA is already working with Forest Rohwer ** Our tools would be...)
  N    18:08 Moore Notes 9 3 08 (diff; hist) . .  (+3,743) . . Katie Pollard (Talk | contribs) (New page: {{ISEEM}} PI iChat (JE, JG, KP) * review article discussion ** has served purpose of us all doing lit review, and talking about articles ** put writing the article itself on hold for now...)
Views
Personal tools