Sreenath:Reprints

CASE Complex Systems Biology Center

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Publications

• Avva J, Weis MC, Soebiyanto RP, Jacobberger JW, Sreenath SN, CytoSys: A Tool for Extracting Cell Cycle-Related Expression Dynamics from Static Data. In Kalyuzhny AE, ed., Signal Transduction Immunohistochemistry: Methods and Protocols. Humana Press, 2011.(CaseOnly)

• Jacobberger JW, Sramkoski RM, Stefan T. Multiparameter cell cycle analysis. In Hawley TS, Hawley RG, ed., Methods in Molecular Biology: Flow Cytometry Protocols. Springer (Humana Press), 2011.(CaseOnly)

• Woost PG, Solchaga LA, Meyerson HJ, Shankey TV, Goolsby CL, Jacobberger JW. High resolution kinetics of cytokine signaling in human CD34/CD117-positive cells in unfractionated bone marrow.(CaseOnly)

• Sreenath SN, Cho K-H, Wellstead P, Modelling the dynamics of signaling pathways, Systems Biology: Essays in Biochemistry, Portland Press, 2008.(CaseOnly)

• Wolkenhauer O, Sreenath N, Wellstead P, Cho K-H, Systems and control theory for medical systems biology, Handbook of Research on Systems Biology Applications in Medicine, 2008. In Press. (CaseOnly)

• Millat T, Sreenath SN, Soebiyanto R, Avva J, Cho K-H, Wolkenhauer O, The role of dynamic stimulation pattern in the analysis of bistable intracellular networks, Biosystems 92(3): 270-281, 2008. (CaseOnly)

• Sreenath N, Cohesiveness: General systems and contra-reductionism revolution, International Journal of General Systems 36(2): 1-15, 2007. (CaseOnly)

• Soebiyanto RP, Sreenath SN, Qu CK, Loparo KA, Bunting KD, Complex systems biology approach to understanding coordination of JAK-STAT signaling. Biosystems 90(3): 830-842, 2007. (CaseOnly)

• Wolkenhauer O, Mesarovic M, Sreenath SN, Wellstead P, Rolfs A, From regulation, control and adaptation to the coordination of cell function. In Regulation. M.Laubichler, H.-J.Rheinsberger, P.Hammerstein (eds.), submitted for publication in Vienna Series of Theoretical Biology, MIT Press. In press.

• Wolkenhauer O, Mesarovic M, Wellstead P, A plea for more theory in molecular biology. 117-137 In Systems Biology - Applications and Perspectives, P.Bringmann, E.C.Butcher, G.Parry, B.Weiss (eds.), Springer-Verlag Berlin Heidelberg 2007. (ISBN 978-3-540-31338-0)

• Sreenath SN, Soebiyanto R, Mesarovic MD, Wolkenhauer O, Coordination of crosstalk between MAPK-PKC pathways: an exploratory study., IET Syst Biol. 1(1):33-40., 2007 Jan (PUBMED, CaseOnly)

• Mesarovic MD and Sreenath SN, Beyond flat earth perspective in systems biology, Biological Theory, MIT Press, 1(1):33-34, 2006 Winter, Posted Online 2006 May (MITPRESS, CaseOnly)

• Soebiyanto RP, Sreenath SN, Mesarovic MD, Wolkenhauer MD, From networks to systems to complex systems: a signaling pathway coordination case study. Decision and Control, 2005 and 2005 European Control Conference. CDC-ECC '05. 44th IEEE Conference on 12-15 Dec. 2005. (CaseOnly)

• Wolkenhauer O, Sreenath SN, Wellstead P, Ullah M, Cho KH, A systems- and signal-oriented approach to intracellular dynamics., Biochem Soc Trans. 33(Pt 3):507-15. , 2005 Jun (PUBMED, CaseOnly)

• Wolkenhauer O, Mesarovic M, Feedback dynamics and cell function: Why systems biology is called Systems Biology., Mol Biosyst. 1(1):14-6. Epub 2005 Apr 8., 2005 May (PUBMED, CaseOnly)

• M.D. Mesarovic, S.N. Sreenath and J.D. Keene, Search for organising principles: understanding in systems biology, Syst Biol (Stevenage). 1(1):19-27. Review. , 2004 Jun (PUBMED, CaseOnly)

Conference Proceedings

• Mesarovic MD, Sreenath SN, Loparo KA, Boothman DA, Soebiyanto RP, Gurkan E, Multilevel, hierarchical systems paradigms for systems biology: search for organizing principles in clusterin pathway. Proceedings of Foundations of Systems Biology in Engineering (FOSBE). Santa Barbara, California. August 7-10, 2005.

• Soebiyanto RP, Sreenath SN, Mesarovic MD, Wolkenhauer O. From networks to systems to complex systems: a signaling coordination case study. 44th IEEE Conference on Decision and Control (CDC) and European Control Conference (ECC). Seville, Spain. December 12-15, 2005.

Conference Posters

• Weis MC, Avva J, Mesarovic MD, Loparo KA, Shukla S, Gupta S, Sreenath SN. A systems approach to understanding the PI3K-Akt-NFkB pathway in prostate cancer. American Association for Cancer Research (AACR) Annual Meeting. San Diego, California. April 12-16, 2008.

• Weis MC, Avva J, Soebiyanto RP, Shukla S, Gupta S, Sreenath SN. Complex systems biology of prostate cancer. 8th International Conference on Systems Biology (ICSB). Long Beach, California. October 1-6, 2007.

• Soebiyanto RP, Avva J, Qu CK, Bunting KD, Loparo KD, Mesarovic MD, Sreenath SN. IL3-induced JAK-STAT signaling: A complex systems biology approach. 7th International Conference on Systems Biology (ICSB). Yokohama, Japan. October 6-11, 2006.

• Avva J, Weis M, Soebiyanto RP, Loparo KA, Shukla S, Gupta S, Sreenath SN. A systems approach to understanding the PI3K-Akt-NFkB pathway in prostate cancer. 7th International Conference on Systems Biology (ICSB). Yokohama, Japan. October 6-11, 2006.

• Soebiyanto RP, Sreenath SN, Boothman DA, Loparo KA, Mesarovic MD, Gurkan E, Chankong V. IR-Induced sCLU pathway: A preliminary study. 6th International Conference on Systems Biology (ICSB). Boston, MA. October 19024, 2005.

• Soebiyanto RP, Sreenath SN, Mesarovic MD, Gurkan E, Loparo KA, Boothman DA, Kinsella T, Radivoyevitch T. From networks to systems to complex systems: A signaling pathway coordination case study. NIIH-NCI Integrative Cancer Biology Program Workshop and Conference. Berkeley, CA. May 2005.

• Gurkan E, Loparo KA, et al. Conceptual models for cell cycle, DNA replication and mismatach repair. NIIH-NCI Integrative Cancer Biology Program Workshop and Conference. Berkeley, CA. May 2005.