Stanford/BIOE44:Module 2

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(Inventory for Arsenic Sensor)
 
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|'''Group Members'''
|'''Group Members'''
|'''Part'''
|'''Part'''
-
|'''Yes/No'''
 
|'''Status'''
|'''Status'''
 +
|'''Volume'''
|'''Concentration'''
|'''Concentration'''
-
|'''Digested? If so, where?'''
 
|-
|-
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| Orientation
+
| Chris and Karina
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| 1
+
| pSB2k3 (digested (E and P), extracted, purified)
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| Tue Mar 30
+
| Ready for Ligation
-
| No
+
| 25 uL
-
| [[Stanford/BIOE44:Lab essentials | Lab essentials]]
+
| 80 ng/uL
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| [[Media:BIOE44 2010 Day 0.pdf | Lecture Notes]]
+
|-
 +
| Daniel and Aaditya
 +
| arsR insert
 +
| Digested at E and S
 +
| 25 uL
 +
| 36.8 ng/uL
|-  
|-  
 +
|
 +
| arsR insert
 +
| Digested at X and S, extracted from gel
 +
| 2 gel bands
 +
| (hasn't been purified yet)
 +
|-
 +
| Travis and Scott
 +
| none
 +
|
 +
|
 +
|
 +
|-
 +
| Frank, Claire, and Sanjay
 +
| pSB2k3 vector (with K274111 insert)
 +
| undigested
 +
| a substantial amount
 +
| 203 ng/ul
 +
|-
 +
|
 +
| pSB2K3 vector (low copy vector and red-orange insert)
 +
| digested with E,P (for double ligation) and X,P (for single ligation); not running in gels yet
 +
| 25uL each
 +
| 273 ng/uL
 +
|-
 +
|
 +
| color 004 light green insert
 +
| digested X,P and running in gels
 +
| ~15uL
 +
| 110 ng/uL
 +
|-
 +
|
 +
| arsR insert
 +
| digested E,S and running in gels
 +
| ~15 uL
 +
| 133 ng/uL
 +
|-
 +
|
 +
| color 004 light green insert
 +
| digested X,P and not running in gels yet
 +
| 40 uL
 +
| 110 ng/uL
 +
|-
 +
|
 +
| arsR
 +
| digested E,S and not running in gels yet
 +
| 40 uL
 +
| 133 ng/uL
 +
|-
 +
|Sunny, Alex
 +
| color 002 purple insert
 +
| digested X,P, gel extracted
 +
|
 +
| 0 ng/uL (no DNA retrieved from gels)
 +
|-
 +
|
 +
|arsR insert
 +
|digested E,S, gel extracted
 +
|
 +
|0 ng/uL (no DNA retrieved from gels)
 +
|-
 +
|
 +
| pSB2K3 vector (with K274111 insert)
 +
| undigested
 +
| 48 uL
 +
| 8.8 ng/ul
 +
|-
 +
|
 +
| S03511 vector (low-medium copy #, inducible)
 +
| undigested
 +
| 0uL
 +
| 41.2 ng/uL
 +
|-
 +
|
 +
| J13023-1 vector (low-medium copy #, inducible)
 +
| undigested
 +
| 27uL
 +
| 97.2 ng/uL
 +
|-
 +
|
 +
| J13023-2 vector (low-medium copy #, inducible)
 +
| undigested
 +
| 27uL
 +
| 93.7 ng/uL
 +
|-
 +
|
 +
| J13002-1 vector (low-medium copy #, constitutive)
 +
| undigested
 +
| 28uL
 +
| 103.9 ng/uL
 +
|-
 +
|
 +
| J13002-2 vector (low-medium copy #, constitutive)
 +
| undigested
 +
| 29uL
 +
| 109.1 ng/uL
 +
|-
 +
|Kosh & Isis
 +
| Purple Color generator
 +
| cut at XbaI & PstI, gel extracted (ready for ligation)
 +
| ~5uL
 +
|
 +
|-
 +
|
 +
|Dark Green Color generator
 +
|cut at XbaI & PstI, gel extracted (ready for ligation)
 +
|~5uL
 +
|
 +
|-
 +
|
 +
|Light Green Color generator
 +
|cut at XbaI & PstI, gel extracted (ready for ligation)
 +
| ~5uL
 +
|
 +
|-
|}
|}
-
==Introduction==
 
-
TBA
 
-
 
-
==Schedule==
 
-
 
-
TBA
 

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Module 2: Genetic Devices

Inventory for Arsenic Sensor

Group Members Part Status Volume Concentration
Chris and Karina pSB2k3 (digested (E and P), extracted, purified) Ready for Ligation 25 uL 80 ng/uL
Daniel and Aaditya arsR insert Digested at E and S 25 uL 36.8 ng/uL
arsR insert Digested at X and S, extracted from gel 2 gel bands (hasn't been purified yet)
Travis and Scott none
Frank, Claire, and Sanjay pSB2k3 vector (with K274111 insert) undigested a substantial amount 203 ng/ul
pSB2K3 vector (low copy vector and red-orange insert) digested with E,P (for double ligation) and X,P (for single ligation); not running in gels yet 25uL each 273 ng/uL
color 004 light green insert digested X,P and running in gels ~15uL 110 ng/uL
arsR insert digested E,S and running in gels ~15 uL 133 ng/uL
color 004 light green insert digested X,P and not running in gels yet 40 uL 110 ng/uL
arsR digested E,S and not running in gels yet 40 uL 133 ng/uL
Sunny, Alex color 002 purple insert digested X,P, gel extracted 0 ng/uL (no DNA retrieved from gels)
arsR insert digested E,S, gel extracted 0 ng/uL (no DNA retrieved from gels)
pSB2K3 vector (with K274111 insert) undigested 48 uL 8.8 ng/ul
S03511 vector (low-medium copy #, inducible) undigested 0uL 41.2 ng/uL
J13023-1 vector (low-medium copy #, inducible) undigested 27uL 97.2 ng/uL
J13023-2 vector (low-medium copy #, inducible) undigested 27uL 93.7 ng/uL
J13002-1 vector (low-medium copy #, constitutive) undigested 28uL 103.9 ng/uL
J13002-2 vector (low-medium copy #, constitutive) undigested 29uL 109.1 ng/uL
Kosh & Isis Purple Color generator cut at XbaI & PstI, gel extracted (ready for ligation) ~5uL
Dark Green Color generator cut at XbaI & PstI, gel extracted (ready for ligation) ~5uL
Light Green Color generator cut at XbaI & PstI, gel extracted (ready for ligation) ~5uL
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