Stephanopoulos:BIOGREP

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Biogrep

Outline:

Biogrep is a tool designed to quickly match large sets of patterns against biosequence databases and is optimized for multi--processor computers. Biogrep uses standard POSIX extended regular expressions and can divide the pattern--matching task between a user--specified number of processors.

Biogrep is copyright 2003 Massachusetts Institute of Technology and is distributed under a GNU public license (GPL).

Downloads:

Supporting Papers:

  • Kyle Jensen et. al. (2002); "Biogrep: A multi-threaded pattern matcher for large pattern sets", (unpublished) - Biogrep.pdf



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