Stephanopoulos:Literature Reviewed - Revision history

Aboganza: /* 2008 */

2008-09-11T22:05:49Z

2008

←Older revision		Revision as of 22:05, 11 September 2008
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	#Mitch1 pmid=18093856		#Mitch1 pmid=18093856
	#Mitch2 pmid=11997466		#Mitch2 pmid=11997466
		+	</biblio>
		+
		+	=== 11 September 2008: Mitchell Tai===
		+
		+	Mitchell presented two papers relating to future metabolic engineering tasks for biodiesel production: conversion of fatty acids to fatty acid alkyl esters, and secretion of fatty acids/triglycerides. The former is performed using a wax ester synthase/diglyceride acyltransferase enzyme from ''Acinetobacter'' sp. which transesterifies alcohols with acyl-coA. The latter has been found from a knockout of the FAA (acyl-CoA synthetase) enzymes in S. cerevisiae.
		+
		+	<biblio>
		+	#Mitch3 pmid=16946248
		+	#Mitch4 pmid=12501395
	</biblio>		</biblio>

	<big>'''''back to the [[Stephanopoulos Lab]] home page'''''</big>		<big>'''''back to the [[Stephanopoulos Lab]] home page'''''</big>

Aboganza: /* 2008 */

2008-05-02T03:09:06Z

2008

←Older revision		Revision as of 03:09, 2 May 2008
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	#Curt5 pmid=17600181		#Curt5 pmid=17600181
	</biblio>		</biblio>
		+
		+

	=== 20 March 2008: Mitchell Tai===		=== 20 March 2008: Mitchell Tai===

Aboganza: /* 2008 */

2008-05-02T03:08:30Z

2008

←Older revision		Revision as of 03:08, 2 May 2008
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	#Curt4 pmid=18218864		#Curt4 pmid=18218864
	#Curt5 pmid=17600181		#Curt5 pmid=17600181
		+	</biblio>
		+
		+	=== 20 March 2008: Mitchell Tai===
		+
		+	Mitchell presented a paper on a method for genome-scale analysis and tracking of library population under selective pressure. The technique, named SCALEs, utilizes microarrays to determine distribution of gene fragements in plasmids in a population. It is useful for determining genes which have beneficial (or deleterious) effects on cell fitness.
		+
		+	<biblio>
		+	#Mitch1 pmid=18093856
		+	#Mitch2 pmid=11997466
	</biblio>		</biblio>

	<big>'''''back to the [[Stephanopoulos Lab]] home page'''''</big>		<big>'''''back to the [[Stephanopoulos Lab]] home page'''''</big>

Curt at 16:57, 12 February 2008

2008-02-12T16:57:41Z

←Older revision		Revision as of 16:57, 12 February 2008
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	The purpose of this page is to post the recent articles that we in the Stephanopoulos group review in our nearly-weekly literature review presentations. Sometimes the presenter focuses on a particular paper, and sometimes the roughly one-hour talk gives a brief overview of an important series of related papers.		The purpose of this page is to post the recent articles that we in the Stephanopoulos group review in our nearly-weekly literature review presentations. Sometimes the presenter focuses on a particular paper, and sometimes the roughly one-hour talk gives a brief overview of an important series of related papers.

		+	== 2006 ==
	=== 27 April 2006: Curt Fischer ===		=== 27 April 2006: Curt Fischer ===
	Curt presented a recent PNAS article <cite>Curt1</cite> which explicated a newly-discovered operon in E. coli. This operon encodes a previously unreported pathway for uracil degradation, which ends in the excretion of 3-hydroxypropionic acid in the medium. He also briefly mentioned two other recent high-profile papers on nitrogen metabolism--one reported the genome sequence of a anaerobic ammonium oxidizing bacterium and hypthesized the full structure of this metabolic pathway <cite>Curt2</cite>, and the other presents laborious and careful analysis carbon utilization of non-thermophilic archaea living in medium-depth oceanic waters<cite>Curt3</cite>. These bacteria fix inorganic carbon and oxidize nitrogen, and are probably major players in the global nitrogen cycle.		Curt presented a recent PNAS article <cite>Curt1</cite> which explicated a newly-discovered operon in E. coli. This operon encodes a previously unreported pathway for uracil degradation, which ends in the excretion of 3-hydroxypropionic acid in the medium. He also briefly mentioned two other recent high-profile papers on nitrogen metabolism--one reported the genome sequence of a anaerobic ammonium oxidizing bacterium and hypthesized the full structure of this metabolic pathway <cite>Curt2</cite>, and the other presents laborious and careful analysis carbon utilization of non-thermophilic archaea living in medium-depth oceanic waters<cite>Curt3</cite>. These bacteria fix inorganic carbon and oxidize nitrogen, and are probably major players in the global nitrogen cycle.
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	</biblio>		</biblio>

-		+	== 2007 ==
	=== 8 March 2007: Benjamin L. Wang ===		=== 8 March 2007: Benjamin L. Wang ===

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	</biblio>		</biblio>

		+	==2008==
	=== 7 February 2008: Curt R. Fischer===		=== 7 February 2008: Curt R. Fischer===

Curt at 16:55, 12 February 2008

2008-02-12T16:55:49Z

←Older revision		Revision as of 16:55, 12 February 2008
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	</biblio>		</biblio>

		+	=== 7 February 2008: Curt R. Fischer===
		+
		+	Curt discussed the two high-profile papers from the J. Craig Venter Institute on genome transplantation and genome synthesis. The lab debated if the popular press's treatment of the two articles was consistent with their actual scientific impact.
		+	<biblio>
		+	#Curt4 pmid=18218864
		+	#Curt5 pmid=17600181
		+	</biblio>

	<big>'''''back to the [[Stephanopoulos Lab]] home page'''''</big>		<big>'''''back to the [[Stephanopoulos Lab]] home page'''''</big>

Ben wang: /* Literature Reviewed */

2007-12-17T20:08:34Z

Literature Reviewed

←Older revision		Revision as of 20:08, 17 December 2007
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	#Jose4 pmid=17086191		#Jose4 pmid=17086191
	</biblio>		</biblio>
		+

	=== 8 March 2007: Benjamin L. Wang ===		=== 8 March 2007: Benjamin L. Wang ===
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	#Jamey2 pmid=17435746		#Jamey2 pmid=17435746
	</biblio>		</biblio>
		+

	=== 13 December 2007: Benjamin L. Wang ===		=== 13 December 2007: Benjamin L. Wang ===
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	#Ben2 pmid=17898166		#Ben2 pmid=17898166
	</biblio>		</biblio>
		+

	<big>'''''back to the [[Stephanopoulos Lab]] home page'''''</big>		<big>'''''back to the [[Stephanopoulos Lab]] home page'''''</big>

Ben wang: /* Literature Reviewed */

2007-12-17T20:07:21Z

Literature Reviewed

←Older revision		Revision as of 20:07, 17 December 2007
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	</biblio>		</biblio>

		+	=== 13 December 2007: Benjamin L. Wang ===
		+
		+	Ben presented a paper describing a model relating mRNA, protein, enzymatic activity, and flux levels. The model system used was the glycolytic pathway in Saccharomyces cerevisiae.
		+
		+	<biblio>
		+	#Ben2 pmid=17898166
		+	</biblio>

	<big>'''''back to the [[Stephanopoulos Lab]] home page'''''</big>		<big>'''''back to the [[Stephanopoulos Lab]] home page'''''</big>

Jameyy: /* 30 Nov 2006: José O. Alemán */

2007-05-03T19:23:41Z

30 Nov 2006: José O. Alemán

←Older revision		Revision as of 19:23, 3 May 2007
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	<biblio>		<biblio>
-	#~~Jose3~~ pmid=17086191	+	#Jose4 pmid=17086191
	</biblio>		</biblio>

Jameyy: /* 30 Nov 2006: José O. Alemán */

2007-05-03T19:23:03Z

30 Nov 2006: José O. Alemán

←Older revision		Revision as of 19:23, 3 May 2007
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	<biblio>		<biblio>
-	#~~Jose2~~ pmid=17086191	+	#Jose3 pmid=17086191
	</biblio>		</biblio>
-

	=== 8 March 2007: Benjamin L. Wang ===		=== 8 March 2007: Benjamin L. Wang ===

Jameyy: /* Literature Reviewed */

2007-05-03T19:22:22Z

Literature Reviewed

←Older revision		Revision as of 19:22, 3 May 2007
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	<biblio>		<biblio>
-	#~~Jose1~~ pmid=17086191	+	#Jose2 pmid=17086191
	</biblio>		</biblio>

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	#Ben1 pmid=17218526		#Ben1 pmid=17218526
	</biblio>		</biblio>
		+

	=== 3 May 2007: Jamey D. Young ===		=== 3 May 2007: Jamey D. Young ===