Synthetic Biology:BioBricks: Difference between revisions

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'''This is a portal for information relating to the [http://parts.mit.edu Registry of Standard Biological Parts]. Please add any information relevant to BioBricks protocols and standards.'''
'''This is a portal for information relating to the [http://parts.mit.edu Registry of Standard Biological Parts]. Please add any information relevant to BioBricks protocols and standards.'''


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The Registry of Standard Biological Parts is a collection of parts: sequences of DNA with specific function that can be combined together to implement more complex functions.  These parts are called BioBricks.
The Registry of Standard Biological Parts is a collection of parts: sequences of DNA with specific function that can be combined together to implement more complex functions.  These parts are called BioBricks.
==Standards of practice==
Along with this collection of parts, it is useful to have a set of standards of practice that govern the engineering of biological systems.  There have been some initial attempts to brainstorm what form those standards might take.  It is likely that we will need several classes of standards and that each class of standards which have different versions to meet different needs. 
*'''Design''': the way(s) in which systems are designed from BioBrick parts.
**See [[Synthetic Biology:Abstraction hierarchy | Abstraction hierarchy]] for a discussion on how cope with the design of increasingly complex biological systems.
*'''Fabrication''': the way(s) in which BioBricks are physically constructed and assembled together.
**See [[Synthetic Biology:BioBricks/Part fabrication | Part fabrication]] for information on construction of new biological parts.
**See [[BioBricks construction tutorial]], [[Synthetic Biology:BioBricks/3A assembly | 3A assembly]] or [[Silver: BB Strategy | Silver lab assembly strategy]] for information on assembly of existing biological parts.
**See [[Synthetic Biology:Vectors | Vectors]] for information on the vectors in which BioBricks reside.
*'''Documentation''': the way(s) in which BioBricks are documented.
**See [[Barcodes]] for information on signing BioBricks parts.
**See [[Receiver Definition | Device datasheet example]] for a working example of documenting a BioBrick.
**See [[Synthetic Biology:Semantic web ontology | Semantic web ontology]] for an ontology for biological parts.
*'''Characterization''': the way(s) in which the behavior of BioBricks are measured.
**See [[Parts characterization]] for some preliminary notes on parts characterization.
**See [[Standardized GFP quantification]] for notes on making absolute molecule number measurements.
*'''Operation''': the conditions under which systems from BioBricks are operated.
**See [[Synthetic Biology:Vectors | Vectors]] for information on the vectors in which BioBricks reside.
**See [[Standard E. coli Strain for BioBricks]] for notes on constructing a novel strain in which all BioBricks would operate.


==Protocols==
==Protocols==
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*[[Synthetic Biology:BioBricks/Part fabrication | Part fabrication]]
*[[Synthetic Biology:BioBricks/Part fabrication | Part fabrication]]
*[[Silver: BB Strategy | Silver lab strategy]]
*[[Silver: BB Strategy | Silver lab strategy]]
*[[Synthetic Biology:BioBricks/Standard FACS protocol]]


==Information==
==Information==
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*[[Synthetic Biology:Semantic web ontology | Ontology]]
*[[Synthetic Biology:Semantic web ontology | Ontology]]
*[[Synthetic Biology:BioBricks/Naming a new biological part | How to name a new BioBrick]]
*[[Synthetic Biology:BioBricks/Naming a new biological part | How to name a new BioBrick]]
*[[Synthetic Biology:BioBricks/Standardization | Standards of practice for engineered biological systems]]
*[[PoPS]] and [[RiPS]]


==Projects==
==Projects==
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*[[Synthetic Biology:Abstraction hierarchy | Abstraction hierarchy]]
*[[Synthetic Biology:Abstraction hierarchy | Abstraction hierarchy]]
*[[Parts characterization]]
*[[Parts characterization]]
*[[Registry Wish List | Request list for new registry features and bug reports]]
*[[Synthetic Biology:BioBricks/mRNA design rules|mRNA design rules]]
*[[Registry of Standard Biological Parts | Registry of Standard Biological Parts on OpenWetWare]]
 
==Questions==
'''Anyone with questions re BioBricks or BioBricks assembly can email <code>biobricks AT openwetware DOT org</code>.'''
 
'''If you want to join the help/discussion list, [[List:Biobricks|add yourself to the mailing list]].'''


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Latest revision as of 09:14, 4 October 2007

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This is a portal for information relating to the Registry of Standard Biological Parts. Please add any information relevant to BioBricks protocols and standards.

Introduction

The Registry of Standard Biological Parts is a collection of parts: sequences of DNA with specific function that can be combined together to implement more complex functions. These parts are called BioBricks.

Protocols

Information

Projects

Discussions

Questions

Anyone with questions re BioBricks or BioBricks assembly can email biobricks AT openwetware DOT org.

If you want to join the help/discussion list, add yourself to the mailing list.

This site is hosted on OpenWetWare and can be edited by all members of the Synthetic Biology community.
Making life better, one part at a time.


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