Synthetic Biology:Semantic web ontology/Query

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Miscellaneous

• RDF Query Survey - query language survey
• A Comparison of RDF Query Languages from 2005-04-11
• Redland Rasqal RDF Query Demonstration
• Sesame RQL: a Tutorial
• Algae an RDF Query Language used in the W3C Annotea Server
• Life Sciences Queries - ESW Wiki
• Yeast Hub query form
• RDF Data Access Working Group (DAWG)
  • DawgShows - ESW Wiki
• URIQA (URI Query Agent) is a model for knowledge discovery, both from authoritative sources as well as from arbitrary third party sources. It introduces an extension to the present web architecture used to indicate to a web server that it should resolve the specified URI in terms of knowledge about the resource denoted by that URI rather than in terms of a representation of the resource in question.
  • CBD - Concise Bounded Description
  • Semantic Web Methods for HTTP: URIQA extends the present web architecture by introducing the following new HTTP methods for interacting with an authoritative semantic web enabled web server:
    • MGET - return a concise bounded description of the resource denoted by the request URI
    • MPUT - add the statements contained in a concise bounded description of the resource, provided as input, to the (possibly empty) body of knowledge maintained about the resource denoted by the request URI
    • MDELETE - remove the statements contained in a concise bounded description of the resource, provided as input, from the existing knowledge maintained about the resource denoted by the request URI

RDQL

1. RDQL - A Query Language for RDF - W3C submission
2. RDQL Tutorial from phpxmlclasses project
3. A Programmer's Introduction to RDQL - Jena tutorial

SPARQL

The SPARQL Protocol and RDF Query Language (SPARQL) is a query language and protocol for RDF.

REST conceptualizes (and HTTP standardizes) public interfaces; SPARQL standardizes how one interacts, ad hoc'edly and without central control, with arbitrary slices of someone else's data.

• SPARQL Wikipedia article (specs, articles, tutorials, examples, demos)
• SPARQL FAQ
• SPARQL Query Language for RDF
• SPARQL Query Results XML Format
• SPARQL Protocol for RDF
• SPARQL: Web 2.0 Meet the Semantic Web @ oreillynet.com
• Introducing SPARQL: Querying the Semantic Web @ xml.com
• Search RDF data with SPARQL @ ibm.com (using Jena Toolkit)
• Ajax and Sparql
• SPARQL RDF Query Language Reference
• ARQ - SPARQL tutorial

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