Synthetic Biology:Semantic web ontology/Software: Difference between revisions
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*[http://simile.mit.edu/reports/stores/ Scalability Report on Triple Store Applications] | *[http://simile.mit.edu/reports/stores/ Scalability Report on Triple Store Applications] | ||
*[http://www.oracle.com/technology/tech/semantic_technologies/index.html Oracle Semantic Technologies] - links to the white papers at the bottom of the page | *[http://www.oracle.com/technology/tech/semantic_technologies/index.html Oracle Semantic Technologies] - links to the white papers at the bottom of the page | ||
===RDB-RDF=== | |||
*[http://download.oracle.com/otndocs/tech/semantic_web/pdf/w3d_rdf_data_model.pdf RDF data model in Oracle] - white paper (PDF) decribing DB schema for RDF statements storage. | |||
*[http://www-db.stanford.edu/~melnik/rdf/db.html Storing RDF in a relational database] | *[http://www-db.stanford.edu/~melnik/rdf/db.html Storing RDF in a relational database] | ||
*[http://www.w3.org/DesignIssues/RDB-RDF.html Relational Databases on the Semantic Web] from Design Issues | *[http://www.w3.org/DesignIssues/RDB-RDF.html Relational Databases on the Semantic Web] from Design Issues. | ||
*[http://www.w3.org/2001/sw/Europe/reports/scalable_rdbms_mapping_report/ Mapping Semantic Web Data with RDBMSes] from SWAD Europe | *[http://www.w3.org/2001/sw/Europe/reports/scalable_rdbms_mapping_report/ Mapping Semantic Web Data with RDBMSes] from SWAD Europe. | ||
*[http://www2003.org/cdrom/papers/poster/p004/p4-bizer.html D2R Map poster from WWW2003] | |||
===Triple Stores=== | ===Triple Stores=== | ||
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===Other=== | ===Other=== | ||
*[http://www.w3.org/RDF/Validator RDF Validator] | *[http://www.w3.org/RDF/Validator RDF Validator] | ||
*[http://www.wiwiss.fu-berlin.de/suhl/bizer/d2rmap/d2rmap.htm D2R | *[http://www.wiwiss.fu-berlin.de/suhl/bizer/d2rmap/d2rmap.htm D2R Map] - Database to RDF Mapping Language and Processor | ||
==RDF Schema== | ==RDF Schema== | ||
Revision as of 15:48, 1 May 2006
RDF
- Developers Guide to Semantic Web Toolkits for different Programming Languages
- Scalability Report on Triple Store Applications
- Oracle Semantic Technologies - links to the white papers at the bottom of the page
RDB-RDF
- RDF data model in Oracle - white paper (PDF) decribing DB schema for RDF statements storage.
- Storing RDF in a relational database
- Relational Databases on the Semantic Web from Design Issues.
- Mapping Semantic Web Data with RDBMSes from SWAD Europe.
- D2R Map poster from WWW2003
Triple Stores
- Jena - a Java framework for building Semantic Web applications. It provides a programmatic environment for RDF, RDFS and OWL, including a rule-based inference engine.
- jena-dev - Jena developers mailing list archive
- Jena relational database backend
- Joseki - a SPARQL Server for Jena
- ARQ - a SPARQL Processor for Jena
- Eyeball: checking RDF/OWL for common problems
- Jena2 Manager
- 4Suite™: an open-source platform for XML and RDF processing
- Sesame: an open source RDF database with support for RDF Schema inferencing and querying
- kowari|metastore: database for the storage, retrieval and analysis of RDF and OWL metadata
- ARC RDF Store is a SPARQL-enabled RDF storage system optimized for shared, hosted (or otherwise performance-limited) Web environments.
- 3store - developed in the Intelligence, Agents and Multimedia research group at Southampton University, as part of the AKT Project.
- RDF Gateway - commercial Windows app but free version available
Libraries
- Wilbur Nokia RDF toolkit written in Common LISP
- Redland RDF Application Framework (Redland RPMs)
- ActiveRDF is a library for accessing RDF data from Ruby programs.
Browsers
- Tabulator: AJAX and Semantic Web - browser
- SIMILE Longwell is a web-based RDF browser.
- BrownSauce generic RDF browser
- foafnaut - SVG FOAF browser
Parsers
- ARP: Another RDF Parser (Jena RDF/XML Parser, from Jeremy Carroll @ HP)
- MySQL Dmoz RDF Parser - This Perl script converts the Dmoz content.rdf file from the RDF format into a text file which can be easily loaded into MySQL.
Visualization
- RDFRoom is an isometric RDF viewer. It gives the user ways to view and manipulate his RDF data that might make him see the data in a brand new perspective.
- IsaViz is a visual environment for browsing and authoring RDF models represented as graphs.
Other
- RDF Validator
- D2R Map - Database to RDF Mapping Language and Processor
RDF Schema
- RDF Schema formatter - extracts human readable information from a RDF Schema
Ontology editors
- List of ontology editors
- Ontology tools survey @ xml.com from 2004
- Protégé is a free, open source ontology editor and knowledge-base framework
- Protégé OWL Plugin - ontology editor for the Semantic Web
- Projects that use Protégé
- OWL-S Editor is a Tab Widget plugin for Protégé
- OilEd is an ontology editor allowing the user to build ontologies using DAML+OIL
- Ontolingua
- Chimaera is a software system that supports users in creating and maintaining distributed ontologies on the web
- SWOOP A Hypermedia-based Featherweight OWL Ontology Editor
- Altova SemanticWorks - visual RDF and OWL editor that autogenerates RDF/XML and N-Triples
- CmapTools Ontology Editor - concept maps provide a human-centered interface to display the structure, content, and scope of an ontology
- SweDE is built on the Eclipse IDE, includes an OWL editor with helpful features like syntax highlighting, autocompletion, and error-detection. It also currently integrates existing tools like the OWL Validator, Kazuki (OWL to Java code generator), and DumpOnt (Ontology Visualizer).
- m3t4.studio Semantic Toolkit - RDF and OWL editors for the Eclipse IDE.
Query
- SPARQL engine
- sparql2sql - a query engine for SPARQL over Jena triple stores
- Javascript SPARQL library and AJAX SPARQL client
- RDF Query-o-matic Light
- SPARQLer - an RDF Query server
Rule engines
Companies
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