Synthetic Biology:Semantic web ontology/Web Services: Difference between revisions

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==Semantic Web Services==
==Semantic Web Services==
*[http://www.w3.org/2002/ws/ Web Services Activity] @ W3C
*[http://www.daml.org/services/ Semantic Web Services] - daml.org
*[http://www.daml.org/services/ Semantic Web Services] - daml.org
*[http://www.daml.org/services/owl-s/ OWL-S] - Web Service Ontology is a specific OWL ontology designed to provide a framework for semantically describing such services from several perspectives (e.g., discovery, invocation, composition).
**[http://www.daml.org/services/owl-s/ OWL-S] Web Service Ontology is a specific OWL ontology designed to provide a framework for semantically describing such services from several perspectives (e.g., discovery, invocation, composition).
**[http://www.daml.org/services/swsf/ SWSF] Semantic Web Services Framework
*[http://www.ksl.stanford.edu/projects/DAML/Webservices/DAMLS-BPEL.html Comparison of DAML-S and BPEL4WS]
*[http://www.ksl.stanford.edu/projects/DAML/Webservices/DAMLS-BPEL.html Comparison of DAML-S and BPEL4WS]
*[http://webservices.xml.com/pub/a/ws/2002/07/17/daml-s.html The True Meaning of Service] - xml.com
*[http://webservices.xml.com/pub/a/ws/2002/07/17/daml-s.html The True Meaning of Service] @ xml.com
*[http://www.xml.com/pub/a/2002/05/01/webont.html If Ontology, Then Knowledge] - xml.com
*[http://www.xml.com/pub/a/2002/05/01/webont.html If Ontology, Then Knowledge] @ xml.com
*[http://portal.acm.org/citation.cfm?id=1097047.1097057 A framework for semantic web services discovery]
*[http://portal.acm.org/citation.cfm?id=1097047.1097057 A framework for semantic web services discovery]
*[http://www.swsi.org/ SWSI] Semantic Web Services Initiative
*[http://ebusiness.mit.edu/bgrosof/ Benjamin Grosof's homepage]
*[http://www.ibm.com/developerworks/webservices/library/ws-rdf/ Supercharging WSDL with RDF]
*[http://www.w3.org/Submission/WSDL-S/ WSDL-S] @ w3.org
*[http://dynamo.man.ac.uk/ DynamO] - Dynamic Ontologies for Services
*[http://www.ibm.com/developerworks/edu/x-dw-x-ultimashup1.html The ultimate mashup -- Web services and the semantic Web, Part 1: Use and combine Web services]
*[http://sws-challenge.org/ SWS Challenge] - Automating Web Services Mediation Choreography and Discovery
==Service-Oriented Architecture==
*[[Wikipedia:Web_Services|Web Services]] - Wikipedia article
*[http://www.oreillynet.com/lpt/a//webservices/2002/02/12/webservicefaqs.html Top 10 Web Service FAQs]
*[http://www.webservices.org/ WebServices.org]
*[http://www.w3.org/2002/ws/ Web Services Activity] @ W3C
*[[Wikipedia:Service_Oriented_Architecture|Service Oriented Architecture]]
*[http://webservices.xml.com/pub/a/ws/2003/09/30/soa.html Service-Oriented Architecture] @ xml.com
*[http://www.dummies.com/WileyCDA/DummiesTitle/productCd-0470054352.html SOA For Dummies]
*[http://www.ebi.ac.uk/xembl/index.html EMBL in XML]
===SOAP===
*[http://www.w3schools.com/soap/default.asp SOAP tutorial] @ W3Schools
*[http://soapclient.com/ SOAPClient.com] resources and services for SOAP (client, UDDI browser, etc)
===[[Synthetic_Biology:Semantic_web_ontology/REST|REST]]===
===RDDL===
*[http://www.rddl.org/ XML Resource Directory Description Language (RDDL)]
**[http://www.rddl.org/purposes/ URIs For Commonly Defined Link Purposes]
*[http://xml.coverpages.org/rddl.html Cover Pages]
*[http://www.oreillynet.com/pub/a/oreilly/xml/news/xmlnut2_0201.html RDDL Me This: What Does a Namespace URL Locate?]


==Examples==
==Examples==
*[http://aws.amazon.com/ Amazon Web Services]
*[http://aws.amazon.com/ Amazon Web Services]
*[http://www.google.com/apis/ Google API]
===Life sciences===
*[http://taverna.sourceforge.net/ Taverna project] - biological workflows using web services
*[http://biomoby.org/ BioMOBY] - ontology-based messaging and data integration standard
**[http://hackathon.dbcls.jp/ BioHackathon 2008]
*[http://inparanoid.cgb.ki.se/ InParanoid] - Eukaryotic Ortholog Groups
*[[doi:10.1093/bioinformatics/bti740|Intelligent client for integrating bioinformatics services]]
*[http://soap.bind.ca/help_soap_api.jsp BIND SOAP] - Biomolecular interaction network SOAP API
*[http://eutils.ncbi.nlm.nih.gov/entrez/query/static/esoap_help.html Entrez Utilities Web Service] from NCBI
*[http://www.bioinfo.no/courses/wscourse Web Services in Bioinformatics] - introductory course


==Notes==
==Notes==

Latest revision as of 21:15, 8 February 2008

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Semantic Web Services

Service-Oriented Architecture

SOAP

REST

RDDL

Examples

Life sciences

Notes

  • semantic search engines can help discover web services (enhance UDDI with inferences)

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