Synthetic Biology:Semantic web ontology/Web Services: Difference between revisions
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==Semantic Web Services== | ==Semantic Web Services== | ||
*[http://www.daml.org/services/ Semantic Web Services] - daml.org | *[http://www.daml.org/services/ Semantic Web Services] - daml.org | ||
*[http://www.daml.org/services/owl-s/ OWL-S] | **[http://www.daml.org/services/owl-s/ OWL-S] Web Service Ontology is a specific OWL ontology designed to provide a framework for semantically describing such services from several perspectives (e.g., discovery, invocation, composition). | ||
**[http://www.daml.org/services/swsf/ SWSF] Semantic Web Services Framework | |||
*[http://www.ksl.stanford.edu/projects/DAML/Webservices/DAMLS-BPEL.html Comparison of DAML-S and BPEL4WS] | *[http://www.ksl.stanford.edu/projects/DAML/Webservices/DAMLS-BPEL.html Comparison of DAML-S and BPEL4WS] | ||
*[http://webservices.xml.com/pub/a/ws/2002/07/17/daml-s.html The True Meaning of Service] | *[http://webservices.xml.com/pub/a/ws/2002/07/17/daml-s.html The True Meaning of Service] @ xml.com | ||
*[http://www.xml.com/pub/a/2002/05/01/webont.html If Ontology, Then Knowledge] | *[http://www.xml.com/pub/a/2002/05/01/webont.html If Ontology, Then Knowledge] @ xml.com | ||
*[http://portal.acm.org/citation.cfm?id=1097047.1097057 A framework for semantic web services discovery] | *[http://portal.acm.org/citation.cfm?id=1097047.1097057 A framework for semantic web services discovery] | ||
*[http://www.swsi.org/ SWSI] Semantic Web Services Initiative | |||
*[http://ebusiness.mit.edu/bgrosof/ Benjamin Grosof's homepage] | |||
*[http://www.ibm.com/developerworks/webservices/library/ws-rdf/ Supercharging WSDL with RDF] | |||
*[http://www.w3.org/Submission/WSDL-S/ WSDL-S] @ w3.org | |||
*[http://dynamo.man.ac.uk/ DynamO] - Dynamic Ontologies for Services | |||
*[http://www.ibm.com/developerworks/edu/x-dw-x-ultimashup1.html The ultimate mashup -- Web services and the semantic Web, Part 1: Use and combine Web services] | |||
*[http://sws-challenge.org/ SWS Challenge] - Automating Web Services Mediation Choreography and Discovery | |||
==Service-Oriented Architecture== | ==Service-Oriented Architecture== | ||
*[[Wikipedia:Web_Services|Web Services]] - Wikipedia article | |||
*[http://www.oreillynet.com/lpt/a//webservices/2002/02/12/webservicefaqs.html Top 10 Web Service FAQs] | |||
*[http://www.webservices.org/ WebServices.org] | |||
*[http://www.w3.org/2002/ws/ Web Services Activity] @ W3C | *[http://www.w3.org/2002/ws/ Web Services Activity] @ W3C | ||
*[http://webservices.xml.com/pub/a/ws/2003/09/30/soa.html Service-Oriented Architecture] | *[[Wikipedia:Service_Oriented_Architecture|Service Oriented Architecture]] | ||
*[http://webservices.xml.com/pub/a/ws/2003/09/30/soa.html Service-Oriented Architecture] @ xml.com | |||
*[http://www.dummies.com/WileyCDA/DummiesTitle/productCd-0470054352.html SOA For Dummies] | |||
*[http://www.ebi.ac.uk/xembl/index.html EMBL in XML] | *[http://www.ebi.ac.uk/xembl/index.html EMBL in XML] | ||
===SOAP=== | ===SOAP=== | ||
*[http://www.w3schools.com/soap/default.asp SOAP tutorial] @ W3Schools | |||
*[http://soapclient.com/ SOAPClient.com] resources and services for SOAP (client, UDDI browser, etc) | |||
===[[Synthetic_Biology:Semantic_web_ontology/REST|REST]]=== | |||
=== | ===RDDL=== | ||
*[http://www.xml.com/pub/ | *[http://www.rddl.org/ XML Resource Directory Description Language (RDDL)] | ||
**[http://www.rddl.org/purposes/ URIs For Commonly Defined Link Purposes] | |||
*[http://xml.coverpages.org/rddl.html Cover Pages] | |||
*[http://www.oreillynet.com/pub/a/oreilly/xml/news/xmlnut2_0201.html RDDL Me This: What Does a Namespace URL Locate?] | |||
==Examples== | ==Examples== | ||
*[http://aws.amazon.com/ Amazon Web Services] | *[http://aws.amazon.com/ Amazon Web Services] | ||
*[http://www.google.com/apis/ Google API] | *[http://www.google.com/apis/ Google API] | ||
===Life sciences=== | |||
*[http://taverna.sourceforge.net/ Taverna project] - biological workflows using web services | |||
*[http://biomoby.org/ BioMOBY] - ontology-based messaging and data integration standard | |||
**[http://hackathon.dbcls.jp/ BioHackathon 2008] | |||
*[http://inparanoid.cgb.ki.se/ InParanoid] - Eukaryotic Ortholog Groups | |||
*[[doi:10.1093/bioinformatics/bti740|Intelligent client for integrating bioinformatics services]] | |||
*[http://soap.bind.ca/help_soap_api.jsp BIND SOAP] - Biomolecular interaction network SOAP API | |||
*[http://eutils.ncbi.nlm.nih.gov/entrez/query/static/esoap_help.html Entrez Utilities Web Service] from NCBI | |||
*[http://www.bioinfo.no/courses/wscourse Web Services in Bioinformatics] - introductory course | |||
==Notes== | ==Notes== |
Latest revision as of 21:15, 8 February 2008
Semantic Web Services
- Semantic Web Services - daml.org
- Comparison of DAML-S and BPEL4WS
- The True Meaning of Service @ xml.com
- If Ontology, Then Knowledge @ xml.com
- A framework for semantic web services discovery
- SWSI Semantic Web Services Initiative
- Benjamin Grosof's homepage
- Supercharging WSDL with RDF
- WSDL-S @ w3.org
- DynamO - Dynamic Ontologies for Services
- The ultimate mashup -- Web services and the semantic Web, Part 1: Use and combine Web services
- SWS Challenge - Automating Web Services Mediation Choreography and Discovery
Service-Oriented Architecture
- Web Services - Wikipedia article
- Top 10 Web Service FAQs
- WebServices.org
- Web Services Activity @ W3C
- Service Oriented Architecture
- Service-Oriented Architecture @ xml.com
- SOA For Dummies
- EMBL in XML
SOAP
- SOAP tutorial @ W3Schools
- SOAPClient.com resources and services for SOAP (client, UDDI browser, etc)
REST
RDDL
- XML Resource Directory Description Language (RDDL)
- Cover Pages
- RDDL Me This: What Does a Namespace URL Locate?
Examples
Life sciences
- Taverna project - biological workflows using web services
- BioMOBY - ontology-based messaging and data integration standard
- InParanoid - Eukaryotic Ortholog Groups
- Intelligent client for integrating bioinformatics services
- BIND SOAP - Biomolecular interaction network SOAP API
- Entrez Utilities Web Service from NCBI
- Web Services in Bioinformatics - introductory course
Notes
- semantic search engines can help discover web services (enhance UDDI with inferences)
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