Synthetic Biology:Tools: Difference between revisions
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===DNA Tools=== | ===DNA Tools=== | ||
* [http://www.invitrogen.com/content.cfm?pageid=10373 Vector NTI] -- A free windows tool for sequence analysis and data management. Only for Windows. | * [http://www.invitrogen.com/content.cfm?pageid=10373 Vector NTI] -- A free windows tool for sequence analysis and data management. Only for Windows. | ||
*[http://paris.chem.yale.edu/extinct.html Biopolymer calculator--Schepartz lab] | |||
**calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein | |||
===RNA Tools=== | ===RNA Tools=== | ||
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===Protein Tools=== | ===Protein Tools=== | ||
* [http://www.scripps.edu/mb/barbas/zfdesign/zfdesignhome.php Zinc Finger Tools -- Barbas Lab] | * [http://www.scripps.edu/mb/barbas/zfdesign/zfdesignhome.php Zinc Finger Tools -- Barbas Lab] | ||
*[http://us.expasy.org/ ExPASy Proteomics server] | |||
**links to many pages to calculate parameters of your favorite proteins | |||
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Revision as of 18:22, 17 September 2005
Via this page, we hope to maintain a collection of links to online tools that are related to Synthetic Biology
DNA Tools
- Vector NTI -- A free windows tool for sequence analysis and data management. Only for Windows.
- Biopolymer calculator--Schepartz lab
- calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein
RNA Tools
- mFold by Michael Zuker. This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.
Protein Tools
- Zinc Finger Tools -- Barbas Lab
- ExPASy Proteomics server
- links to many pages to calculate parameters of your favorite proteins
