Synthetic Biology:Tools: Difference between revisions
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===DNA Tools=== | ===DNA Tools=== | ||
* [http://www.invitrogen.com/content.cfm?pageid=10373 Vector NTI] -- A free windows tool for sequence analysis and data management. Only for Windows. | * [http://www.invitrogen.com/content.cfm?pageid=10373 Vector NTI] -- A free windows tool for sequence analysis and data management. Only for Windows. | ||
*[http://paris.chem.yale.edu/extinct.html Biopolymer calculator | *[http://paris.chem.yale.edu/extinct.html Biopolymer calculator] by Schepartz lab | ||
**calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein | **calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein | ||
Revision as of 18:26, 17 September 2005
Via this page, we hope to maintain a collection of links to online tools that are related to Synthetic Biology
DNA Tools
- Vector NTI -- A free windows tool for sequence analysis and data management. Only for Windows.
- Biopolymer calculator by Schepartz lab
- calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein
RNA Tools
- mFold by Michael Zuker. This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.
Protein Tools
- Zinc Finger Tools by Barbas Lab
- ExPASy Proteomics server
- links to many pages to calculate parameters of your favorite proteins
