Synthetic Biology:Tools

Via this page, we hope to maintain a collection of links to online tools that are related to Synthetic Biology

DNA Tools

• Vector NTI -- A free windows tool for sequence analysis and data management. Only for Windows.
• Biopolymer calculator--Schepartz lab
  • calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein

RNA Tools

• mFold by Michael Zuker. This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.

Protein Tools

• Zinc Finger Tools by Barbas Lab
• ExPASy Proteomics server
  • links to many pages to calculate parameters of your favorite proteins