Synthetic Biology:Vectors/Inventory: Difference between revisions

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See the [[Synthetic Biology:Vectors/Nomenclature | vector nomenclature]].
See the [[Synthetic Biology:Vectors/Nomenclature | vector nomenclature]] for an explanation of what the vector names mean.


==pSB1* Plasmids==
==pSB1* Plasmids==
===pSB1A1===
===pSB1A1===
*constructed by [[User:tk | Tom Knight]]
*constructed by [[User:tk | Tom Knight]]


===pSB1A2-1===
===pSB1A2-P1010===
*(formerly known as pSB1A2-1)
*derived from pSB1A1
*derived from pSB1A1
*constructed by [[User:lchan | Leon Chan]]
*constructed by [[User:lchan | Leon Chan]]
===pSB1A3-1===
 
*(formerly known as pSB104.2)
===pSB1A3-P1010===
*(formerly known as pSB1A3-1 or pSB104.2)
*purpose: base plasmid used to insert biobricks parts
*purpose: base plasmid used to insert biobricks parts
*derived from pSB1A2-1
*derived from pSB1A2-1
*constructed by [[User:Rshetty|Reshma]]
*constructed by [[User:Rshetty|Reshma]]


===pSB1AT3-1===
===pSB1AT3-P1010===
*(formerly known as pSB204.3 or pSB3.1.7.1)
*(formerly known as pSB1AT3-1 or pSB204.3 or pSB3.1.7.1)
*purpose: high copy number plasmid to be used in the three antibiotic selection assembly technique.
*purpose: high copy number plasmid to be used in the three antibiotic selection assembly technique.
*derived from pSB1A3-1
*derived from pSB1A3-1
*constructed by [[User:Rshetty|Reshma]]
*constructed by [[User:Rshetty|Reshma]]
===pSB1AK3-1===
 
*(formerly known as pSB304.3 or pSB5.1.7.1)
===pSB1AK3-P1010===
*(formerly known as pSB1AK3-1 or pSB304.3 or pSB5.1.7.1)
*purpose: high copy number plasmid to be used in the three antibiotic selection assembly technique.
*purpose: high copy number plasmid to be used in the three antibiotic selection assembly technique.
*derived from pSB1A3-1
*derived from pSB1A3-1
*constructed by [[User:Rshetty|Reshma]]
*constructed by [[User:Rshetty|Reshma]]
===pSB1AC3-1===
 
===pSB1AC3-P1010===
*(formerly known as pSB1AC3-1)
*purpose: high copy number plasmid to be used in the three antibiotic selection assembly technique.
*purpose: high copy number plasmid to be used in the three antibiotic selection assembly technique.
*derived from pSB1A3-1
*derived from pSB1A3-1
*constructed by Robert Bryant
*constructed by Robert Bryant
===pSB1C3-P1010===
* Derived from pSB1AC3-P1010 with the ampicillin removed
* constructed by [[User:Austin|Austin]]
===pSB1K3-P1010===
* Derived from pSB1AK3-P1010 with the ampicillin removed
* constructed by [[User:Austin|Austin]]
===pSB1T3-P1010===
* Derived from pSB1AT3-P1010 with the ampicillin removed
* constructed by [[User:Austin|Austin]]


==pSB2* Plasmids==
==pSB2* Plasmids==
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*problems: contains a PstI site in backbone
*problems: contains a PstI site in backbone


===pSB2K3-1===
===pSB2K3-P1010===
*(formerly known as pSB2K3-1)
*purpose: IPTG-inducible copy number plasmid
*purpose: IPTG-inducible copy number plasmid
*derived from pSB2K0
*derived from pSB2K0
*constructed by [[User:skosuri | Sri Kosuri]]
*constructed by [[User:skosuri | Sri Kosuri]]
*[http://parts.mit.edu/registry/index.php/Part:pSB2K3 BioBrick part information]


===pSB2K4-1===
===pSB2K4-P1010===
*(formerly known as pSB2K4-1)
*purpose: remove many restriction sites from backbone of pSB2K
*purpose: remove many restriction sites from backbone of pSB2K
*Created by a backport from a BioBricks++ plasmid back to a BioBricks cloning site
*Created by a backport from a BioBricks++ plasmid back to a BioBricks cloning site
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==pSB3* Plasmids==
==pSB3* Plasmids==
===pSB3K1===
===pSB3K1===
*(formerly known as p15A-Kan v2.0)
*(formerly known as p15A-Kan v2.0)
*purpose: low copy number plasmid to be used for unstable assemblies that contain lac components.
*purpose: low copy number plasmid to be used for unstable assemblies that contain lac components.
*constructed by [[User:Rshetty|Reshma]]
*constructed by [[User:Rshetty|Reshma]]
===pSB3K3-1===
 
===pSB3K3-P1010===
*(formerly known as pSB3K3-1)
*purpose: low copy number plasmid to be used for unstable assemblies that contain lac components. Contains ccdB to facilitate cloning.
*purpose: low copy number plasmid to be used for unstable assemblies that contain lac components. Contains ccdB to facilitate cloning.
*derived from pSB3K1
*derived from pSB3K1
*constructed by [[User:Rshetty|Reshma]]
*constructed by [[User:Rshetty|Reshma]]
===pSB3K5-I52001===
*purpose: low copy number plasmid. Contains ccdB and a high copy origin at the insert to facilitate cloning.
*derived from <bbpart>BBa_I51001</bbpart>
*constructed by [[User:Reshma P. Shetty|Reshma]]
===pSB3C5-I52001===
*purpose: low copy number plasmid. Contains ccdB to facilitate cloning.
*derived from <bbpart>BBa_I51001</bbpart>
*constructed by [[User:Reshma P. Shetty|Reshma]]
===pSB3T5-I52001===
*purpose: low copy number plasmid. Contains ccdB to facilitate cloning.
*derived from <bbpart>BBa_I51001</bbpart>
*constructed by [[User:Reshma P. Shetty|Reshma]]


==pSB4* Plasmids==
==pSB4* Plasmids==
===pSB4A3-1===
 
===pSB4A3-P1010===
*(formerly known as pSB4A3-1)
*purpose: low copy number plasmid to be used for unstable assemblies that contain lac components. Contains ccdB to facilitate cloning.
*purpose: low copy number plasmid to be used for unstable assemblies that contain lac components. Contains ccdB to facilitate cloning.
*derived from pSB4A1
*derived from pSB4A1
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*derived from Elowitz's repressilator plasmid
*derived from Elowitz's repressilator plasmid
*constructed by [[User:Rshetty|Reshma]]
*constructed by [[User:Rshetty|Reshma]]
===pSB4A5-I52001===
*purpose: low copy number plasmid. Contains ccdB and a high copy origin at the insert to facilitate cloning.
*derived from <bbpart>BBa_I51001</bbpart>
*constructed by [[User:Reshma P. Shetty|Reshma]]
===pSB4K5-I52001===
*purpose: low copy number plasmid. Contains ccdB and a high copy origin at the insert to facilitate cloning.
*derived from <bbpart>BBa_I51001</bbpart>
*constructed by [[User:Reshma P. Shetty|Reshma]]
===pSB4C5-I52001===
*purpose: low copy number plasmid. Contains ccdB and a high copy origin at the insert to facilitate cloning.
*derived from <bbpart>BBa_I51001</bbpart>
*constructed by [[User:Reshma P. Shetty|Reshma]]
===pSB4T5-I52001===
*purpose: low copy number plasmid. Contains ccdB to facilitate cloning.
*derived from <bbpart>BBa_I51001</bbpart>
*constructed by [[User:Reshma P. Shetty|Reshma]]

Latest revision as of 12:14, 25 July 2007

See the vector nomenclature for an explanation of what the vector names mean.

pSB1* Plasmids

pSB1A1

pSB1A2-P1010

  • (formerly known as pSB1A2-1)
  • derived from pSB1A1
  • constructed by Leon Chan

pSB1A3-P1010

  • (formerly known as pSB1A3-1 or pSB104.2)
  • purpose: base plasmid used to insert biobricks parts
  • derived from pSB1A2-1
  • constructed by Reshma

pSB1AT3-P1010

  • (formerly known as pSB1AT3-1 or pSB204.3 or pSB3.1.7.1)
  • purpose: high copy number plasmid to be used in the three antibiotic selection assembly technique.
  • derived from pSB1A3-1
  • constructed by Reshma

pSB1AK3-P1010

  • (formerly known as pSB1AK3-1 or pSB304.3 or pSB5.1.7.1)
  • purpose: high copy number plasmid to be used in the three antibiotic selection assembly technique.
  • derived from pSB1A3-1
  • constructed by Reshma

pSB1AC3-P1010

  • (formerly known as pSB1AC3-1)
  • purpose: high copy number plasmid to be used in the three antibiotic selection assembly technique.
  • derived from pSB1A3-1
  • constructed by Robert Bryant

pSB1C3-P1010

  • Derived from pSB1AC3-P1010 with the ampicillin removed
  • constructed by Austin

pSB1K3-P1010

  • Derived from pSB1AK3-P1010 with the ampicillin removed
  • constructed by Austin

pSB1T3-P1010

  • Derived from pSB1AT3-P1010 with the ampicillin removed
  • constructed by Austin


pSB2* Plasmids

pSB2K0

  • (also known as pSCANS)
  • purpose: inducible copy number plasmid
  • problems: contains a PstI site in backbone

pSB2K3-P1010

pSB2K4-P1010

  • (formerly known as pSB2K4-1)
  • purpose: remove many restriction sites from backbone of pSB2K
  • Created by a backport from a BioBricks++ plasmid back to a BioBricks cloning site
  • Contains terminators on both sides of the cloning site, but also contains two extra restriction sites around the cloning site due to process of construction. Does not affect BioBricks construction in any way.
  • Has approximately 2 dozen point mutations in the backbone relative to pSB2K3
  • Derived from pREB1.3 from Leon who removed many of the symmetric restriction sites
  • Further mutations were done to make backbone clean for some Type IIs restriction enzymes including: AarI, AcuI, BbsI, BbvCI, BciVI, BsaI, BsmBI, EarI, N.BstNBI, SgrAI
  • Plasmid is still inducible and functions similarly to pSB2K3
  • constructed by Austin

pSB3* Plasmids

pSB3K1

  • (formerly known as p15A-Kan v2.0)
  • purpose: low copy number plasmid to be used for unstable assemblies that contain lac components.
  • constructed by Reshma

pSB3K3-P1010

  • (formerly known as pSB3K3-1)
  • purpose: low copy number plasmid to be used for unstable assemblies that contain lac components. Contains ccdB to facilitate cloning.
  • derived from pSB3K1
  • constructed by Reshma

pSB3K5-I52001

  • purpose: low copy number plasmid. Contains ccdB and a high copy origin at the insert to facilitate cloning.
  • derived from <bbpart>BBa_I51001</bbpart>
  • constructed by Reshma

pSB3C5-I52001

  • purpose: low copy number plasmid. Contains ccdB to facilitate cloning.
  • derived from <bbpart>BBa_I51001</bbpart>
  • constructed by Reshma

pSB3T5-I52001

  • purpose: low copy number plasmid. Contains ccdB to facilitate cloning.
  • derived from <bbpart>BBa_I51001</bbpart>
  • constructed by Reshma

pSB4* Plasmids

pSB4A3-P1010

  • (formerly known as pSB4A3-1)
  • purpose: low copy number plasmid to be used for unstable assemblies that contain lac components. Contains ccdB to facilitate cloning.
  • derived from pSB4A1
  • constructed by Reshma

pSB4A1

  • (formerly known as pSC101 v1.1)
  • purpose: low copy number plasmid to be used for unstable assemblies that contain lac components.
  • derived from Elowitz's repressilator plasmid
  • constructed by Reshma

pSB4A5-I52001

  • purpose: low copy number plasmid. Contains ccdB and a high copy origin at the insert to facilitate cloning.
  • derived from <bbpart>BBa_I51001</bbpart>
  • constructed by Reshma

pSB4K5-I52001

  • purpose: low copy number plasmid. Contains ccdB and a high copy origin at the insert to facilitate cloning.
  • derived from <bbpart>BBa_I51001</bbpart>
  • constructed by Reshma

pSB4C5-I52001

  • purpose: low copy number plasmid. Contains ccdB and a high copy origin at the insert to facilitate cloning.
  • derived from <bbpart>BBa_I51001</bbpart>
  • constructed by Reshma

pSB4T5-I52001

  • purpose: low copy number plasmid. Contains ccdB to facilitate cloning.
  • derived from <bbpart>BBa_I51001</bbpart>
  • constructed by Reshma
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