T7 Feature Conservation: Difference between revisions
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{{Rebuilding T7}} | |||
== Conserved genomic features across T7 and close relatives == | == Conserved genomic features across T7 and close relatives == | ||
Latest revision as of 11:38, 19 June 2006
| Project pages on Rebuilding T7 | |
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back to Endy Lab | |
Conserved genomic features across T7 and close relatives
The table below shows conservation data for genes, promoters and RNAse III sites, across 5 genomes: T7, T3, gh-1, φYeO3-12 and φA1122.
| Genomes | |||||
| Genes | |||||
| gene=0.3 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=0.3b | ------ | ------ | T3 | ------ | ------ |
| gene=0.4 | T7 | ------ | ------ | ------ | ------ |
| gene=0.45 | ------ | phiYe03-12 | ------ | ------ | ------ |
| gene=0.5 | T7 | ------ | ------ | ------ | ------ |
| gene=0.6 | ------ | ------ | T3 | ------ | ------ |
| gene=0.65 | ------ | ------ | T3 | ------ | ------ |
| gene=0.6a | T7 | phiYe03-12 | ------ | ------ | ------ |
| gene=0.6b | T7 | phiYe03-12 | ------ | ------ | ------ |
| gene=0.7 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=1 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=1.05 | ------ | phiYe03-12 | T3 | ------ | ------ |
| gene=1.1 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=orf1 | ------ | ------ | ------ | ------ | gh-1 |
| gene=orf2 | ------ | ------ | ------ | ------ | gh-1 |
| gene=1.2 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=1.3 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=orf3A | ------ | ------ | ------ | ------ | gh-1 |
| gene=orf3B | ------ | ------ | ------ | ------ | gh-1 |
| gene=1.4 | T7 | ------ | ------ | ------ | ------ |
| gene=1.45 | ------ | phiYe03-12 | ------ | ------ | ------ |
| gene=1.5 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=1.6 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=1.7 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=1.75 | ------ | ------ | ------ | phiA1122 | ------ |
| gene=1.8 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=1.9 | ------ | ------ | T3 | ------ | ------ |
| gene=1.95 | ------ | ------ | T3 | ------ | ------ |
| gene=2 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=orf4 | gh-1 | ||||
| gene=2.5 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=2.8 | T7 | ------ | ------ | ------ | ------ |
| gene=3 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=3.3 | ------ | ------ | ------ | phiA1122 | ------ |
| gene=3.5 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=orf5 | ------ | ------ | ------ | ------ | gh-1 |
| gene=3.7 | ------ | phiYe03-12 | T3 | ------ | ------ |
| gene=3.8 | T7 | ------ | ------ | phiA1122 | gh-1 |
| gene=4 | ------ | ------ | T3 | ------ | gh-1 |
| gene=orf6 | ------ | ------ | ------ | ------ | gh-1 |
| gene=orf7 | ------ | ------ | ------ | ------ | gh-1 |
| gene=4.1 | T7 | ------ | ------ | ------ | ------ |
| gene=4.15 | ------ | phiYe03-12 | ------ | ------ | ------ |
| gene=4.2 | T7 | phiYe03-12 | T3 | ------ | ------ |
| gene=4.3 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=4.5 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=4.7 | T7 | ------ | ------ | phiA1122 | ------ |
| gene=4a | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=4b | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=5 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=orf8 | ------ | ------ | ------ | ------ | gh-1 |
| gene=5.1 | ------ | ------ | T3 | ------ | ------ |
| gene=5.3 | T7 | phiYe03-12 | T3 | ------ | ------ |
| gene=5.5 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=5.5-5.7 | T7 | phiYe03-12 | ------ | ------ | ------ |
| gene=5.7 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=5.9 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=5b | ------ | phiYe03-12 | T3 | ------ | ------ |
| gene=6 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=6.1 | ------ | phiYe03-12 | ------ | ------ | ------ |
| gene=6.3 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=6.5 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=6.7 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=7 | T7 | ------ | ------ | phiA1122 | gh-1 |
| gene=7.3 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=7.7 | T7 | ------ | ------ | phiA1122 | ------ |
| gene=8 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=9 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=10a | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=10b | T7 | phiYe03-12 | T3 | ------ | ------ |
| gene=11 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=12 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=13 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=13.5 | ------ | phiYe03-12 | ------ | ------ | ------ |
| gene=14 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=15 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=16 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=17 | T7 | phiYe03-12 | T3 | phiA1122 | gh |
| gene=orf9 | ------ | ------ | ------ | ------ | gh-1 |
| gene=17.5 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=18 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=18.5 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=18.7 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=19 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| gene=orf10 | ------ | ------ | ------ | ------ | gh-1 |
| gene=orf11 | ------ | ------ | ------ | ------ | gh-1 |
| gene=19.2 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=19.3 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| gene=19.5 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| Promoters | |||||
| promoter=A0 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| promoter=A1 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| promoter=A2 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| promoter=A3 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| promoter=B | T7 | ------ | T3 | ------ | ------ |
| promoter=C | T7 | ------ | T3 | phiA1122 | ------ |
| promoter=phi1 | ------ | ------ | ------ | ------ | gh-1 |
| promoter=phiorf3A | ------ | ------ | ------ | ------ | gh-1 |
| promoter=phi1.05 | ------ | phiYe03-12 | T3 | ------ | ------ |
| promoter=phi1.1 | ------ | phiYe03-12 | T3 | ------ | ------ |
| promoter=phi1.1a | T7 | ------ | ------ | phiA1122 | ------ |
| promoter=phi1.1b | T7 | ------ | ------ | phiA1122 | ------ |
| promoter=phi1.3 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| promoter=phi1.5 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| promoter=phi1.6 | T7 | ------ | ------ | phiA1122 | ------ |
| promoter=phi2.5 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| promoter=phi3.8 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| promoter=phi4.3 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| promoter=phi4.7 | T7 | ------ | ------ | phiA1122 | ------ |
| promoter=phi4c | T7 | ------ | ------ | phiA1122 | ------ |
| promoter=phi5 | ------ | ------ | ------ | ------ | gh-1 |
| promoter=phi6.5 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| promoter=phi9 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| promoter=phi10 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| promoter=phi11 | ------ | phiYe03-12 | T3 | ------ | ------ |
| promoter=phi13 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| promoter=phi17 | T7 | phiYe03-12 | ------ | phiA1122 | gh-1 |
| promoter=phiorf10 | ------ | ------ | ------ | ------ | gh-1 |
| promoter=phiOL | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| promoter=phiOR | T7 | phiYe03-12 | T3 | ------ | ------ |
| Rnase III sites | |||||
| RNAseIII=r0.3 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| RNAseIII=r0.45 | ------ | phiYe03-12 | ------ | ------ | ------ |
| RNAseIII=r0.5 | T7 | ------ | T3 | ------ | ------ |
| RNAseIII=r1 | T7 | phiYe03-12 | T3 | phiA1122 | gh-1 |
| RNAseIII=r1.1 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| RNAseIII=r1.3 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| RNAseIII=r3.8 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| RNAseIII=r4.7 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| RNAseIII=r6.5 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| RNAseIII=r13 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
| RNAseIII=r18.5 | T7 | phiYe03-12 | T3 | phiA1122 | ------ |
