TOP10 chemically competent cells

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This protocol is a variant of the Hanahan protocol <cite>Hanahan91</cite> using CCMB80 buffer for DH10B, TOP10  and MachI strains.  It builds on Example 2 of the  [[Media:pat6855494.pdf | Bloom05 patent]] as well.  This protocol has been tested on TOP10 and MachI cells.  See [[Bacterial Transformation]] for a more general discussion of other techniques.  The  [[Media:pat6960464.pdf | Jesse '464 patent]] describes using this buffer for DH5&alpha; cells.  The [[Media:pat6709852.pdf | Bloom04]] patent describes the use of essentially the same protocol for the Invitrogen Mach 1 cells.
+
{{back to protocols}}
 +
==Overview==
 +
This protocol is a variant of the Hanahan protocol <cite>Hanahan91</cite> using CCMB80 buffer for DH10B, TOP10  and MachI strains.  It builds on Example 2 of the  [[Media:pat6855494.pdf | Bloom05 patent]] as well.  This protocol has been tested on TOP10, MachI and [[Talk:TOP10 chemically competent cells|BL21(DE3)]] cells.  See [[Bacterial Transformation]] for a more general discussion of other techniques.  The  [[Media:pat6960464.pdf | Jesse '464 patent]] describes using this buffer for DH5&alpha; cells.  The [[Media:pat6709852.pdf | Bloom04]] patent describes the use of essentially the same protocol for the Invitrogen Mach 1 cells.
 +
'''This is the chemical transformation protocol used by [[User:Tk|Tom Knight]] and the [http://partsregistry.org Registry of Standard Biological Parts].
 +
 +
==Materials==
 +
*Detergent-free, sterile glassware and plasticware (see procedure)
 +
*Table-top OD600nm spectrophotometer
 +
*[[SOB]]
 +
 +
===CCMB80 buffer===
 +
* 10 mM KOAc pH 7.0 (10 ml of a 1M stock/L)
 +
* 80 mM CaCl<sub>2</sub>.2H<sub>2</sub>O (11.8 g/L)
 +
* 20 mM MnCl<sub>2</sub>.4H<sub>2</sub>O (4.0 g/L)
 +
* 10 mM MgCl<sub>2</sub>.6H<sub>2</sub>O (2.0 g/L)
 +
* 10% glycerol (100 ml/L)
 +
* adjust pH DOWN to 6.4 with 0.1N HCl if necessary
 +
** adjusting pH up will precipitate manganese dioxide from Mn containing solutions.
 +
* sterile filter and store at 4&deg;C
 +
* slight dark precipitate appears not to affect its function
 +
* Note: you can buy pre-made CCMB80 buffer from Teknova
 +
 +
==Procedure==
===Preparing glassware and media===
===Preparing glassware and media===
 +
====Eliminating detergent====
Detergent is a major inhibitor of competent cell growth and transformation.  Glass and plastic
Detergent is a major inhibitor of competent cell growth and transformation.  Glass and plastic
must be detergent free for these protocols.  The easiest way to do this is to avoid washing
must be detergent free for these protocols.  The easiest way to do this is to avoid washing
glassware, and simply rinse it out.  Autoclaving glassware filled 3/4 with DI water is an effective
glassware, and simply rinse it out.  Autoclaving glassware filled 3/4 with DI water is an effective
-
way to remove most detergent residue.  Media and buffers should be prepared in detergent free glassware
+
way to remove most detergent residue.  Media and buffers should be prepared in detergent free glassware and cultures grown up in detergent free glassware.
-
and cultures grown up in detergent free glassware.
+
 
 +
====Prechill plasticware and glassware====
 +
Prechill 250mL centrifuge tubes and screw cap tubes before use.
===Preparing seed stocks===
===Preparing seed stocks===
-
* streak TOP10 cells on an [[SOB]] plate and grow for single colonies at 23 C
+
* Streak TOP10 cells on an [[SOB]] plate and grow for single colonies at 23&deg;C
** room temperature works well
** room temperature works well
-
* Pick single colonies into 2 ml of SOB medium  and shake overnight at 23 C
+
* Pick single colonies into 2 ml of SOB medium  and shake overnight at 23&deg;C
** room temperature works well
** room temperature works well
* Add glycerol to 15%
* Add glycerol to 15%
Line 17: Line 42:
* Place tubes into a zip lock bag, immerse bag into a dry ice/ethanol bath for 5 minutes
* Place tubes into a zip lock bag, immerse bag into a dry ice/ethanol bath for 5 minutes
** This step may not be necessary
** This step may not be necessary
-
* Place in -80 freezer indefinitely.
+
* Place in -80&deg;C freezer indefinitely.
===Preparing competent cells===
===Preparing competent cells===
-
* Inoculate 250 ml of [[SOB]] medium with 1 ml vial of seed stock and grow at 20 C to an OD of 0.3
+
* Inoculate 250 ml of [[SOB]] medium with 1 ml vial of seed stock and grow at 20&deg;C to an OD600nm of 0.3
** This takes approximately 16 hours.
** This takes approximately 16 hours.
** Controlling the temperature makes this a more reproducible process, but is not essential.
** Controlling the temperature makes this a more reproducible process, but is not essential.
** Room temperature will work.  You can adjust this temperature somewhat to fit your schedule
** Room temperature will work.  You can adjust this temperature somewhat to fit your schedule
** Aim for lower, not higher OD if you can't hit this mark
** Aim for lower, not higher OD if you can't hit this mark
-
* Centrifuge at 3000g / 4C for 10 minutes in a flat bottom centrifuge bottle.
+
* Centrifuge at 3000rpm at 4&deg;C for 10 minutes in a flat bottom centrifuge bottle.
** Flat bottom centrifuge tubes make the fragile cells much easier to resuspend
** Flat bottom centrifuge tubes make the fragile cells much easier to resuspend
** It is often easier to resuspend pellets by mixing ''before'' adding large amounts of buffer
** It is often easier to resuspend pellets by mixing ''before'' adding large amounts of buffer
 +
* Discard supernatant by pouring out slowly and pipeting remaining supernatent
* Gently resuspend in 80 ml of ice cold CCMB80 buffer
* Gently resuspend in 80 ml of ice cold CCMB80 buffer
** sometimes this is less than completely gentle.  It still works.
** sometimes this is less than completely gentle.  It still works.
* Incubate on ice 20 minutes
* Incubate on ice 20 minutes
-
* Centrifuge again at 4C and resuspend in 20 ml of ice cold CCMB80 buffer.
+
* Centrifuge again at 4&deg;C and discard supernatant as described above.
-
* Incubate on ice for 20 minutes
+
* Resuspend in 10 ml of ice cold CCMB80 buffer.
 +
* Test OD of a mixture of 200 &mu;l SOC and 50 &mu;l of the resuspended cells.
 +
* Add chilled CCMB80 to yield a final OD of 1.0-1.5 in this test. 
* Aliquot to chilled screw top 2 ml vials or 50 &mu;l into chilled microtiter plates
* Aliquot to chilled screw top 2 ml vials or 50 &mu;l into chilled microtiter plates
-
* Store at -80C indefinitely.
+
* Store at -80&deg;C indefinitely.
** Flash freezing does not appear to be necessary
** Flash freezing does not appear to be necessary
* Test competence (see below)
* Test competence (see below)
-
** Good cells should yield around 100 - 400 colonies
+
* Thawing and refreezing partially used cell aliquots dramatically reduces transformation efficiency by about 3x the first time, and about 6x total after several freeze/thaw cycles.
-
 
+
-
===CCMB80 buffer===
+
-
 
+
-
* 10 mM KOAc pH 7.0 (10 ml of a 1M stock/l)
+
-
* 80 mM CaCl<sub>2</sub>.2H<sub>2</sub>O (11.8 g/l)
+
-
* 20 mM MnCl<sub>2</sub>.4H<sub>2</sub>O (4.0 g/l)
+
-
* 10 mM MgCl<sub>2</sub>.6H<sub>2</sub>O (2.0 g/l)
+
-
* 10% glycerol (100 ml/l)
+
-
* adjust pH DOWN to 6.4 with 0.1N HCl if necessary
+
-
** adjusting pH up will precipitate manganese dioxide from Mn containing solutions.
+
-
* sterile filter and store at 4C
+
-
* slight dark precipitate appears not to affect its function
+
===Measurement of competence===
===Measurement of competence===
* Transform 50 &mu;l of cells with 1 &mu;l of standard pUC19 plasmid (Invitrogen)
* Transform 50 &mu;l of cells with 1 &mu;l of standard pUC19 plasmid (Invitrogen)
-
** This is at 10 pg/&mu;l or 10<sup>-5</sup> &mu;g
+
** This is at 10 pg/&mu;l or 10<sup>-5</sup> &mu;g/&mu;l
 +
** This can be made by diluting 1 &mu;l of NEB pUC19 plasmid (1 &mu;g/&mu;l, NEB part number N3401S) into 100 ml of TE
* Hold on ice 0.5 hours
* Hold on ice 0.5 hours
* Heat shock 60 sec at 42C
* Heat shock 60 sec at 42C
-
* Add 250 &mu;l SOC
+
* Add 250 &mu;l [[SOC]]
* Incubate at 37 C for 1 hour in 2 ml centrifuge tubes rotated
* Incubate at 37 C for 1 hour in 2 ml centrifuge tubes rotated
** using 2ml centrifuge tubes for transformation and regrowth works well because the small volumes flow well when rotated, increasing aeration.
** using 2ml centrifuge tubes for transformation and regrowth works well because the small volumes flow well when rotated, increasing aeration.
-
* Plate 20 &mu;l on AMP plates using 3.5 mm glass beads
+
** For our plasmids (pSB1AC3, pSB1AT3) which are chloramphenicol and tetracycline resistant, we find growing for 2 hours yields many more colonies
-
* Transformation efficiency is 15 x colony count x 10<sup>5</sup>
+
** Ampicillin and kanamycin appear to do fine with 1  hour growth
-
* There is anecdotal evidence that refreezing partially used cell aliquots dramatically reduces transformation efficiency.
+
* Plate 20 &mu;l on AMP plates using sterile 3.5 mm glass beads
 +
** Good cells should yield around 100 - 400 colonies
 +
** Transformation efficiency is (dilution factor=15) x colony count x 10<sup>5</sup>/µgDNA
 +
**We expect that the transformation efficiency should be between 5x10<sup>8</sup> and 5x10<sup>9</sup> cfu/µgDNA
 +
 
 +
==5x Ligation Adjustment Buffer==
 +
* Intended to be mixed with ligation reactions to adjust buffer composition to be near the CCMB80 buffer
 +
* KOAc  40 mM  (40 ml/liter of 1 M KOAc solution, pH 7.0)
 +
* CaCl<sub>2</sub> 400 mM  (200 ml/l of a 2 M solution)
 +
* MnCl<sub>2</sub> 100 mM  (100 ml/l of a 1 M solution)
 +
* Glycerol 46.8%  (468 ml/liter)
 +
* pH adjustment with 2.3%  of a 10% acetic acid solution (12.8ml/liter)
 +
** Previous protocol indicated amount of acetic acid added should be 23 ml/liter but that amount was found to be 2X too much per tests on 1.23.07 --[[User:Meaganl|Meaganl]] 15:50, 25 January 2007 (EST)
 +
* water to 1 liter
 +
* autoclave or sterile filter
 +
* Test pH adjustment by mixing 4 parts ligation buffer + 1 part 5x ligation adjustment buffer and checking pH to be 6.3 - 6.5
 +
 
 +
*'''[[User:Reshma P. Shetty|Reshma]] 10:49, 11 February 2008 (CST)''': Use of the ligation adjustment buffer is optional.
==References==
==References==
<biblio>
<biblio>
# Hanahan91 pmid=1943786
# Hanahan91 pmid=1943786
 +
# Reusch86 pmid=3536850
 +
# Addison04 pmid=15470891
# Bloom04 US Patent 6,709,852 [[Media:pat6709852.pdf]]
# Bloom04 US Patent 6,709,852 [[Media:pat6709852.pdf]]
# Bloom05 US Patent 6,855,494 [[Media:pat6855494.pdf]]
# Bloom05 US Patent 6,855,494 [[Media:pat6855494.pdf]]
Line 71: Line 107:
</biblio>
</biblio>
-
 
+
[[Category:Escherichia coli]]  [[Category:Protocol]]
-
6/7/06 colony counts:
+
-
* Invitrogen control: 281
+
-
* M : 54
+
-
* S1: 125
+
-
* 15/1: 74
+
-
* S2: 166
+
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* 15/2: 177
+
-
* S3: 243
+
-
* 15/3: 60
+
-
 
+
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15/ cells are grown in 15/10 medium.  Slow growth, eliminate this idea.
+
-
Dispose of M, 15/1, 15/2, 15/3 cells.  Redoing competent cells today.
+
-
m/s1/s2/s3 cells are successive versions of competent cells grown in SOB medium.
+

Current revision

back to protocols

Contents

Overview

This protocol is a variant of the Hanahan protocol [1] using CCMB80 buffer for DH10B, TOP10 and MachI strains. It builds on Example 2 of the Bloom05 patent as well. This protocol has been tested on TOP10, MachI and BL21(DE3) cells. See Bacterial Transformation for a more general discussion of other techniques. The Jesse '464 patent describes using this buffer for DH5α cells. The Bloom04 patent describes the use of essentially the same protocol for the Invitrogen Mach 1 cells.

This is the chemical transformation protocol used by Tom Knight and the Registry of Standard Biological Parts.

Materials

  • Detergent-free, sterile glassware and plasticware (see procedure)
  • Table-top OD600nm spectrophotometer
  • SOB

CCMB80 buffer

  • 10 mM KOAc pH 7.0 (10 ml of a 1M stock/L)
  • 80 mM CaCl2.2H2O (11.8 g/L)
  • 20 mM MnCl2.4H2O (4.0 g/L)
  • 10 mM MgCl2.6H2O (2.0 g/L)
  • 10% glycerol (100 ml/L)
  • adjust pH DOWN to 6.4 with 0.1N HCl if necessary
    • adjusting pH up will precipitate manganese dioxide from Mn containing solutions.
  • sterile filter and store at 4°C
  • slight dark precipitate appears not to affect its function
  • Note: you can buy pre-made CCMB80 buffer from Teknova

Procedure

Preparing glassware and media

Eliminating detergent

Detergent is a major inhibitor of competent cell growth and transformation. Glass and plastic must be detergent free for these protocols. The easiest way to do this is to avoid washing glassware, and simply rinse it out. Autoclaving glassware filled 3/4 with DI water is an effective way to remove most detergent residue. Media and buffers should be prepared in detergent free glassware and cultures grown up in detergent free glassware.

Prechill plasticware and glassware

Prechill 250mL centrifuge tubes and screw cap tubes before use.

Preparing seed stocks

  • Streak TOP10 cells on an SOB plate and grow for single colonies at 23°C
    • room temperature works well
  • Pick single colonies into 2 ml of SOB medium and shake overnight at 23°C
    • room temperature works well
  • Add glycerol to 15%
  • Aliquot 1 ml samples to Nunc cryotubes
  • Place tubes into a zip lock bag, immerse bag into a dry ice/ethanol bath for 5 minutes
    • This step may not be necessary
  • Place in -80°C freezer indefinitely.

Preparing competent cells

  • Inoculate 250 ml of SOB medium with 1 ml vial of seed stock and grow at 20°C to an OD600nm of 0.3
    • This takes approximately 16 hours.
    • Controlling the temperature makes this a more reproducible process, but is not essential.
    • Room temperature will work. You can adjust this temperature somewhat to fit your schedule
    • Aim for lower, not higher OD if you can't hit this mark
  • Centrifuge at 3000rpm at 4°C for 10 minutes in a flat bottom centrifuge bottle.
    • Flat bottom centrifuge tubes make the fragile cells much easier to resuspend
    • It is often easier to resuspend pellets by mixing before adding large amounts of buffer
  • Discard supernatant by pouring out slowly and pipeting remaining supernatent
  • Gently resuspend in 80 ml of ice cold CCMB80 buffer
    • sometimes this is less than completely gentle. It still works.
  • Incubate on ice 20 minutes
  • Centrifuge again at 4°C and discard supernatant as described above.
  • Resuspend in 10 ml of ice cold CCMB80 buffer.
  • Test OD of a mixture of 200 μl SOC and 50 μl of the resuspended cells.
  • Add chilled CCMB80 to yield a final OD of 1.0-1.5 in this test.
  • Aliquot to chilled screw top 2 ml vials or 50 μl into chilled microtiter plates
  • Store at -80°C indefinitely.
    • Flash freezing does not appear to be necessary
  • Test competence (see below)
  • Thawing and refreezing partially used cell aliquots dramatically reduces transformation efficiency by about 3x the first time, and about 6x total after several freeze/thaw cycles.

Measurement of competence

  • Transform 50 μl of cells with 1 μl of standard pUC19 plasmid (Invitrogen)
    • This is at 10 pg/μl or 10-5 μg/μl
    • This can be made by diluting 1 μl of NEB pUC19 plasmid (1 μg/μl, NEB part number N3401S) into 100 ml of TE
  • Hold on ice 0.5 hours
  • Heat shock 60 sec at 42C
  • Add 250 μl SOC
  • Incubate at 37 C for 1 hour in 2 ml centrifuge tubes rotated
    • using 2ml centrifuge tubes for transformation and regrowth works well because the small volumes flow well when rotated, increasing aeration.
    • For our plasmids (pSB1AC3, pSB1AT3) which are chloramphenicol and tetracycline resistant, we find growing for 2 hours yields many more colonies
    • Ampicillin and kanamycin appear to do fine with 1 hour growth
  • Plate 20 μl on AMP plates using sterile 3.5 mm glass beads
    • Good cells should yield around 100 - 400 colonies
    • Transformation efficiency is (dilution factor=15) x colony count x 105/µgDNA
    • We expect that the transformation efficiency should be between 5x108 and 5x109 cfu/µgDNA

5x Ligation Adjustment Buffer

  • Intended to be mixed with ligation reactions to adjust buffer composition to be near the CCMB80 buffer
  • KOAc 40 mM (40 ml/liter of 1 M KOAc solution, pH 7.0)
  • CaCl2 400 mM (200 ml/l of a 2 M solution)
  • MnCl2 100 mM (100 ml/l of a 1 M solution)
  • Glycerol 46.8% (468 ml/liter)
  • pH adjustment with 2.3% of a 10% acetic acid solution (12.8ml/liter)
    • Previous protocol indicated amount of acetic acid added should be 23 ml/liter but that amount was found to be 2X too much per tests on 1.23.07 --Meaganl 15:50, 25 January 2007 (EST)
  • water to 1 liter
  • autoclave or sterile filter
  • Test pH adjustment by mixing 4 parts ligation buffer + 1 part 5x ligation adjustment buffer and checking pH to be 6.3 - 6.5
  • Reshma 10:49, 11 February 2008 (CST): Use of the ligation adjustment buffer is optional.

References

  1. Hanahan D, Jessee J, and Bloom FR. . pmid:1943786. PubMed HubMed [Hanahan91]
  2. Reusch RN, Hiske TW, and Sadoff HL. . pmid:3536850. PubMed HubMed [Reusch86]
  3. Addison CJ, Chu SH, and Reusch RN. . pmid:15470891. PubMed HubMed [Addison04]
  4. US Patent 6,709,852 Media:pat6709852.pdf [Bloom04]
  5. US Patent 6,855,494 Media:pat6855494.pdf [Bloom05]
  6. US Patent 6,960,464 Media:pat6960464.pdf [Jesse05]
All Medline abstracts: PubMed HubMed
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