Talk:20.109(S13):Phylogenetic analysis (Day7): Difference between revisions
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I believe some groups are still in the process of reverse complementing inserts in the non-usual orientation. | I believe some groups are still in the process of reverse complementing inserts in the non-usual orientation. | ||
Agi is in the process of trimming and analyzing four additional #709 clones prepped and sequenced yesterday -- looks as though only one will be good. I may not finish until after class today, circa 5 pm. | Agi is in the process of trimming and analyzing four additional #709 clones prepped and sequenced yesterday -- looks as though only one will be good. I may not finish until after class today, circa 5 pm. Update: even later than that. I can do the final addition to an existing #709 .mas file if need be, also including samples from a student who has been ill. | ||
</font color> | </font color> | ||
==Final sample-wide alignment files and trees== | |||
One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees. | |||
==T/R Lab== | |||
{| border="1" | |||
|Sample # | |||
|Alignment file (.mas) | |||
|Tree file (.pdf) | |||
|- | |||
|702 | |||
| | |||
| | |||
|- | |||
|709 | |||
| | |||
| | |||
|- | |||
|712 | |||
| | |||
| | |||
|- | |||
|716 | |||
|No clones worked | |||
|See above | |||
|- | |||
|405 | |||
| | |||
| | |||
|- | |||
|664 | |||
| | |||
| | |||
|- | |||
|732 | |||
| | |||
| | |||
|- | |||
|729 | |||
| | |||
| | |||
|- | |||
|} | |||
==T/R microbiome== | ==T/R microbiome== |
Revision as of 14:54, 7 March 2013
General notes
I believe some groups are still in the process of reverse complementing inserts in the non-usual orientation.
Agi is in the process of trimming and analyzing four additional #709 clones prepped and sequenced yesterday -- looks as though only one will be good. I may not finish until after class today, circa 5 pm. Update: even later than that. I can do the final addition to an existing #709 .mas file if need be, also including samples from a student who has been ill.
Final sample-wide alignment files and trees
One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees.
T/R Lab
Sample # | Alignment file (.mas) | Tree file (.pdf) |
702 | ||
709 | ||
712 | ||
716 | No clones worked | See above |
405 | ||
664 | ||
732 | ||
729 |
T/R microbiome
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
W/F microbiome
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
T/R microsporidia gels
W/F microsporidia gels