Talk:20.109(S14):Phylogenetic and primer analyses (Day7): Difference between revisions
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Annie Kuan (talk | contribs) |
Annie Kuan (talk | contribs) |
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Line 88: | Line 88: | ||
|308 | |308 | ||
|[[Media:TRRed308C_1.txt]] | |[[Media:TRRed308C_1.txt]] | ||
| | |Nonspecific insertion | ||
|[[Media:TRRed308C3_.txt]] | |[[Media:TRRed308C3_.txt]] | ||
| | |No significant matches found | ||
| | |Nonspecific insertion | ||
|[[Media:TRRed308_C6.txt]] | |[[Media:TRRed308_C6.txt]] | ||
| | |Poor sequencing data | ||
|[[Media:TRRed308C8.txt]] | |[[Media:TRRed308C8.txt]] | ||
|[[Media:TRRed_308_final.xls]] | |[[Media:TRRed_308_final.xls]] | ||
Line 102: | Line 102: | ||
|LT | |LT | ||
|308 | |308 | ||
| | |No priming | ||
|[[Media:TRRed308C2B.txt]] | |[[Media:TRRed308C2B.txt]] | ||
|[[Media:TRRed308C3B.txt]] | |[[Media:TRRed308C3B.txt]] | ||
|[[Media:TRRed308C4B.txt]] | |[[Media:TRRed308C4B.txt]] | ||
| | |Too short (300bp) | ||
|[[Media:TRRed308C6_B.txt]] | |[[Media:TRRed308C6_B.txt]] | ||
| | |Nonspecific insertion | ||
|[[Media:TRRed308C8B.txt]] | |[[Media:TRRed308C8B.txt]] | ||
|[[Media:TRRed_308_final.xls]] | |[[Media:TRRed_308_final.xls]] |
Revision as of 08:41, 8 March 2014
General notes and updates
Sample # | Species | Sex | Location | Final MEGA File |
308 | RBG | F | Carson Beach | Media: TR-308-alignment-FINAL.mas |
312 | RBG | F | Carson Beach | Media: TR-312-alignment_FINAL.mas |
290 | RBG | F | Carson Beach | |
274 | RBG | M | Carson Beach | |
286 | RBG | M | Carson Beach | |
294 | RBG | M | Carson Beach | |
304 | HG | M | South Bay Center | Media: TR-304-Alignment-Final.mas |
252 | HG | M | South Bay Center | Media: TR-252-Alignment_finalv1.mas |
260 | HG | M | South Bay Center |
T/R microbiota
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
W/F microbiota
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
T/R microsporidia gels
Gel number | Reference samples | Group 1 | Group 2 | Picture |
---|---|---|---|---|
T/R 1 | Specificity (VC, EH, mixture) | Orange | Yellow | Media:TR1.BMP |
T/R 2 | Specificity (VC, EH, mixture) | Blue | W/F Green | Media:TR2.BMP |
T/R 3 | Sensitivity (EH: lo, mid, hi) | Red | Green | Media:TR3.BMP |
T/R 4 | Sensitivity (EH: lo, mid, hi) | Pink | Blue | Media:TR4.BMP |
W/F microsporidia gels
Gel number | Reference samples | Group 1 | Group 2 | Picture |
---|---|---|---|---|
W/F 1 | Specificity (VC, EH, mixture) | Blue | Purple | Media:WF1.BMP |
W/F 2 | Specificity (VC, EH, mixture) | Silver | White | Media:WF2.BMP |
W/F 3 | Sensitivity (EH: lo, mid, hi) | Red | Orange | Media:WF3.BMP |
W/F 4 | Sensitivity (EH: lo, mid, hi) | Yellow | Pink | Media:WF4.BMP |