Talk:20.109(S13):Phylogenetic analysis (Day7)
I believe some groups are still in the process of reverse complementing inserts in the non-usual orientation.
Agi is in the process of trimming and analyzing four additional #709 clones prepped and sequenced yesterday -- looks as though only one will be good. I may not finish until after class today, circa 5 pm. Update: even later than that. I can do the final addition to an existing #709 .mas file if need be, also including samples from a student who has been ill.
Final sample-wide alignment files and trees
One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees.
|Sample #||Alignment file (.mas)||Tree file (.pdf)|
|702||Media: Final_702_Alignment.mas||Media: Final_702_PhyloTree.pdf|
|709||Media: 709-final-alignment.mas||Media: S13_709-final-tree.pdf||Agi's species|
|712||Media: Final_712_Alignment.mas||Media: Final_712_PhyloTree.pdf|
|716||No clones worked||No clones worked|
|405||Media: Final_405_Alignment.mas||Media: Final_405_PhyloTree.pdf|
|664||Media: Updated WFTR-664-alignment.mas||Media: New Updated WFTR-664-tree.pdf|
|732||Media: 732-FinalAlignment.mas||Media: 732-FinalTree.pdf|
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
T/R microsporidia gels
W/F microsporidia gels