Talk:BE.109:Bio-material engineering/Sequence analysis

Tuesday/Thursday Lab Sequence Data

team color	candidate number	sequence	relative strength	comments/notes
Green	A	XXWAPAXXXXXX	1/18 of pCT-CON	This sequence did not show significant binding ability, although because of the poor sequencing data, we can not make any definite conclusions on the cause of the poor gold binding ability.
Green	B	XXXXVGXXXXXX	3.5 of pCT-CON	This sequence has some gold binding ability, however unlike D, the sequence data obtained for this colony is quite poor. As a result, we can not make any definite conclusions on what lead to it's binding.
Green	C	XXXXXXXXSLFL	.83 of pCT-CON	This sequence did not show significant binding ability, although because of the poor sequencing data, we can not make any definite conclusions on the cause of the poor gold binding ability.
Green	D	LRXXTXGLSLCR	7.83 of pCT-CON	Colony D was the only one from which we got some sort of meaningful sequence data from. Luckily, it was also our strongest binder. The sequence data shows a prevalence of Yellow Aliphatic Groups (Leucine) and Green Hydroxyl Groups (Serine), which may be important for gold binding.
Purple	B	WRxxxACRCVxx	0.3 x pCT-CON	2 cysteines may be signficant
Purple	C	MYYVAASxSVLM	2 x pCT-CON	2 methionines and 2 serines may be significant
Purple	D	*LARPVA*xxIx	10 x pCT-CON	best binder. stop codons are TAG and TGA
Yellow	A	EXXXPIXXXXXX	1.89 of pCT-CON
Yellow	B	RXRLRVXXXXVR	0.413 of pCT-CON
Yellow	C	EGXXPXXXXXXX	0.55 of pCT-CON
Yellow	D	FWCQSRWXEILV	1.72 of pCT-CON
Pink	A	VAASRLVCCXXXL	6 x pCT-CON	2 cysteines right next to each other might mean that disulfide bonds cannot occur so sulfur available to bind to gold.
Pink	D	XXADKLLXHAPQ*	6 x pCT-CON	Histidine present which if we enrinched the species, histidine would probably be present in greater amounts :)

Wednesday/Friday Lab Sequence Data

team color	candidate number	sequence	relative strength	comments/notes

HAVE A GREAT SUMMER!!