Talk:Wikiomics:BLAST tutorial

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m (blastall switches)
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--[[User:Dan Bolser|Dan]] 14:21, 15 January 2010 (EST)
--[[User:Dan Bolser|Dan]] 14:21, 15 January 2010 (EST)
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You are right, -b is the switch for blastall. Two relevant lines from blastall --help
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<pre>
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  -v  Number of database sequences to show one-line descriptions for (V) [Integer]
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    default = 500
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  -b  Number of database sequence to show alignments for (B) [Integer]
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    default = 250
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</pre>
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*'''[[User:Darek Kedra|darked]] 09:43, 12 February 2010 (EST)''':

Revision as of 09:43, 12 February 2010

What are the parameters to use to limit the number of allignmets produced by blast for each query sequence?

I seem to remember it is '-b xxx' or something....

--Dan 14:21, 15 January 2010 (EST)


You are right, -b is the switch for blastall. Two relevant lines from blastall --help


  -v  Number of database sequences to show one-line descriptions for (V) [Integer]
    default = 500
  -b  Number of database sequence to show alignments for (B) [Integer]
    default = 250
  • darked 09:43, 12 February 2010 (EST):
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