Talk:Wikiomics:BLAST tutorial
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I seem to remember it is '-b xxx' or something.... | I seem to remember it is '-b xxx' or something.... | ||
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| + | --[[User:Dan Bolser|Dan]] 14:21, 15 January 2010 (EST) | ||
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| + | You are right, -b is the switch for blastall. Two relevant lines from blastall --help | ||
| + | <pre> | ||
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| + | -v Number of database sequences to show one-line descriptions for (V) [Integer] | ||
| + | default = 500 | ||
| + | -b Number of database sequence to show alignments for (B) [Integer] | ||
| + | default = 250 | ||
| + | </pre> | ||
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| + | *'''[[User:Darek Kedra|darked]] 09:43, 12 February 2010 (EST)''': | ||
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| + | == BLAST offspring == | ||
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| + | There is a large number of BLAST-like algorithms, trying to i.e. speed up the search by sacrificing sensitivity, or modify it to suit specific tasks, like genome-2-genome comparison. | ||
| + | Before creating a separate page I will be dumping here such links *'''[[User:Darek Kedra|darked]] 07:39, 18 March 2010 (EDT)''': | ||
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| + | * PLAST : Parallel Local Alignment Search Tool for Database Comparison | ||
| + | http://www.irisa.fr/symbiose/projects/plast/ | ||
| + | |||
| + | =Decypher & BLAST= | ||
| + | * http://edwards.sdsu.edu/wiki/index.php/Difference_between_timelogic_and_NCBI_blastall | ||
Current revision
What are the parameters to use to limit the number of allignmets produced by blast for each query sequence?
I seem to remember it is '-b xxx' or something....
--Dan 14:21, 15 January 2010 (EST)
You are right, -b is the switch for blastall. Two relevant lines from blastall --help
-v Number of database sequences to show one-line descriptions for (V) [Integer]
default = 500
-b Number of database sequence to show alignments for (B) [Integer]
default = 250
- darked 09:43, 12 February 2010 (EST):
BLAST offspring
There is a large number of BLAST-like algorithms, trying to i.e. speed up the search by sacrificing sensitivity, or modify it to suit specific tasks, like genome-2-genome comparison. Before creating a separate page I will be dumping here such links *darked 07:39, 18 March 2010 (EDT):
- PLAST : Parallel Local Alignment Search Tool for Database Comparison
http://www.irisa.fr/symbiose/projects/plast/
