Talk:Wikiomics:BLAST tutorial: Difference between revisions
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Dan Bolser (talk | contribs) No edit summary |
Darek Kedra (talk | contribs) m (→BLAST ofspring) |
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--[[User:Dan Bolser|Dan]] 14:21, 15 January 2010 (EST) | --[[User:Dan Bolser|Dan]] 14:21, 15 January 2010 (EST) | ||
You are right, -b is the switch for blastall. Two relevant lines from blastall --help | |||
<pre> | |||
-v Number of database sequences to show one-line descriptions for (V) [Integer] | |||
default = 500 | |||
-b Number of database sequence to show alignments for (B) [Integer] | |||
default = 250 | |||
</pre> | |||
*'''[[User:Darek Kedra|darked]] 09:43, 12 February 2010 (EST)''': | |||
== BLAST offspring == | |||
There is a large number of BLAST-like algorithms, trying to i.e. speed up the search by sacrificing sensitivity, or modify it to suit specific tasks, like genome-2-genome comparison. | |||
Before creating a separate page I will be dumping here such links *'''[[User:Darek Kedra|darked]] 07:39, 18 March 2010 (EDT)''': | |||
* PLAST : Parallel Local Alignment Search Tool for Database Comparison | |||
http://www.irisa.fr/symbiose/projects/plast/ | |||
=Decypher & BLAST= | |||
* http://edwards.sdsu.edu/wiki/index.php/Difference_between_timelogic_and_NCBI_blastall | |||
Latest revision as of 05:07, 25 March 2010
What are the parameters to use to limit the number of allignmets produced by blast for each query sequence?
I seem to remember it is '-b xxx' or something....
--Dan 14:21, 15 January 2010 (EST)
You are right, -b is the switch for blastall. Two relevant lines from blastall --help
-v Number of database sequences to show one-line descriptions for (V) [Integer]
default = 500
-b Number of database sequence to show alignments for (B) [Integer]
default = 250
- darked 09:43, 12 February 2010 (EST):
BLAST offspring
There is a large number of BLAST-like algorithms, trying to i.e. speed up the search by sacrificing sensitivity, or modify it to suit specific tasks, like genome-2-genome comparison. Before creating a separate page I will be dumping here such links *darked 07:39, 18 March 2010 (EDT):
- PLAST : Parallel Local Alignment Search Tool for Database Comparison
http://www.irisa.fr/symbiose/projects/plast/
