The BioBricks Foundation:RFC: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| Line 17: | Line 17: | ||
RFC's are static documents or digital objects like video's intended to get an idea, proposed standard, or method out to the rest of the community for comment. RFC's are numbered, for ease of referencing, and the numbers are assigned by the BBF. | RFC's are static documents or digital objects like video's intended to get an idea, proposed standard, or method out to the rest of the community for comment. RFC's are numbered, for ease of referencing, and the numbers are assigned by the BBF. | ||
Instructions for requesting a BBF RFC number, preparing an RFC, and submitting an RFC to the BBF are described in [ | Instructions for requesting a BBF RFC number, preparing an RFC, and submitting an RFC to the BBF are described in [http://dspace.mit.edu/bitstream/handle/1721.1/44960/BBFRFC0.pdf?sequence=1 BBF RFC 0]. | ||
*Blank templates for drafting a BBF RFC are available | *Blank templates for drafting a BBF RFC are available | ||
| Line 27: | Line 27: | ||
The complete list of all assigned RFC numbers and RFC documents (for those submitted) is listed below. | The complete list of all assigned RFC numbers and RFC documents (for those submitted) is listed below. | ||
* | * BBF RFC 0: Instructions to BBF RFC Authors | ||
** by Chris Anderson, Austin Che, Mackenzie Cowell, Alistair Elfick, Kim de Mora, Drew Endy, Chris French, Tom Knight, Antonia Mayer, George McArthur, Randy Rettberg, Douglas Ridgway, Reshma Shetty, Sean Sleight, and Daniel Tarjan | ** by Chris Anderson, Austin Che, Mackenzie Cowell, Alistair Elfick, Kim de Mora, Drew Endy, Chris French, Tom Knight, Antonia Mayer, George McArthur, Randy Rettberg, Douglas Ridgway, Reshma Shetty, Sean Sleight, and Daniel Tarjan | ||
**[http://hdl.handle.net/1721.1/44960 DSpace] [http://dspace.mit.edu/bitstream/handle/1721.1/44960/BBFRFC0.pdf?sequence=1 PDF] (direct link) | |||
* BBF RFC<nowiki></nowiki> 1: Definition of the nature of a part | * BBF RFC<nowiki></nowiki> 1: Definition of the nature of a part | ||
**requested by Kristian Müller and Katja Arndt | **requested by Kristian Müller and Katja Arndt | ||
| Line 41: | Line 42: | ||
*BBF RFC<nowiki></nowiki> 6: Synthetic Terminators for Transcription Attenuation | *BBF RFC<nowiki></nowiki> 6: Synthetic Terminators for Transcription Attenuation | ||
**requested by George McArthur IV and Daniel R Tarjan | **requested by George McArthur IV and Daniel R Tarjan | ||
* | * BBF RFC<nowiki></nowiki> 7: Original Biobrick distribution data sheet, May 22, 2002 | ||
** This is the data sheet accompanying the first public Biobrick distribution | ** This is the data sheet accompanying the first public Biobrick distribution | ||
**[[Media:BBFRFC7.pdf |RFC Draft]] | |||
** Tom Knight | ** Tom Knight | ||
* | * BBF RFC<nowiki></nowiki> 8: Early Biobrick standard design | ||
** Early description of a (now defunct) Biobrick standard | ** Early description of a (now defunct) Biobrick standard | ||
**[[Media:BBFRFC8.pdf |RFC Draft]] | |||
** Tom Knight | ** Tom Knight | ||
* | * BBF RFC<nowiki></nowiki> 9: Idempotent vector design for the standard assembly of Biobricks | ||
** Initial detailed motivation and definition of the Biobrick standard | ** Initial detailed motivation and definition of the Biobrick standard | ||
**[[Media:BBFRFC9.pdf | RFC Draft]] | |||
** Tom Knight, Randall Rettberg, Leon Chan, Drew Endy, Reshma Shetty, Austin Che | ** Tom Knight, Randall Rettberg, Leon Chan, Drew Endy, Reshma Shetty, Austin Che | ||
* | * Draft standard for Biobrick biological parts | ||
** Formal description of the initial Biobrick standard | ** Formal description of the initial Biobrick standard - [[The_BioBricks_Foundation:BBFRFC10| RFC Draft]] | ||
** Tom Knight, May 3, 2007 | ** Tom Knight, May 3, 2007 | ||
* | * BBF RFC 11: Biobrick assembly standard modifications | ||
** Proposed modification of enzymes to facilitate protein fusions (SpeI/NheI replaces XbaI/SpeI) | ** Proposed modification of enzymes to facilitate protein fusions (SpeI/NheI replaces XbaI/SpeI) | ||
**[[Media:BBFRFC11.pdf | RFC Draft]] | |||
** Tom Knight, July 8, 2008 | ** Tom Knight, July 8, 2008 | ||
* | * BBF RFC12: Draft Biobrick BB-2 standard for biological parts | ||
** Formal description of the Biobrick BB-2 standard | ** Formal description of the Biobrick BB-2 standard - [[The_BioBricks_Foundation:BBFRFC12 |RFC draft]] | ||
** Tom Knight, November 19, 2008 | ** Tom Knight, November 19, 2008 | ||
* | * BBF RFC13: Rethinking the boundaries and composition of coding regions | ||
** Logical split of the protein coding region into domains | ** Logical split of the protein coding region into domains - [[BBRFC13 | RFC draft]] | ||
** Tom Knight | ** Tom Knight | ||
* | * BBF RFC14: Protein domain fusions in BB-2 assembly | ||
** Application of the RFC13 ideas to assembly with BB-2 | ** Application of the RFC13 ideas to assembly with BB-2 - [[BBRFC14 | RFC draft]] | ||
** Tom Knight | ** Tom Knight | ||
* [[The BioBricks Foundation:BBFRFC15 | BBF RFC 15: Innovations Mean Nothing Unless You Use Them -- The New BioScaffold Family of BioBrick Parts To Enable Manipulations Such as Protein Fusions, Library Construction, and Part Domestication]] | * [[The BioBricks Foundation:BBFRFC15 | BBF RFC 15: Innovations Mean Nothing Unless You Use Them -- The New BioScaffold Family of BioBrick Parts To Enable Manipulations Such as Protein Fusions, Library Construction, and Part Domestication]] | ||
| Line 76: | Line 81: | ||
* BBF RFC 19: Measuring the Activity of BioBrick Promoters Using an In Vivo Reference Standard | * BBF RFC 19: Measuring the Activity of BioBrick Promoters Using an In Vivo Reference Standard | ||
**requested by Jason R Kelly and Drew Endy | **requested by Jason R Kelly and Drew Endy | ||
* | * BBF RFC 20: Constraint Relaxation of RFC 10 for Assembling Standard Biological Parts | ||
**[[Media:BBFRFC20.pdf |RFC Draft]] | |||
**Austin Che | **Austin Che | ||
* BBF RFC 21: BglBricks Assembly Standard | * BBF RFC 21: BglBricks Assembly Standard | ||
| Line 83: | Line 89: | ||
**requested by Julie Norville, Angela Belcher and Tom Knight | **requested by Julie Norville, Angela Belcher and Tom Knight | ||
* BBF RFC 23: A New Biobrick Assembly Strategy Designed for Facile Protein Engineering | * BBF RFC 23: A New Biobrick Assembly Strategy Designed for Facile Protein Engineering | ||
**Ira Phillips and Pamela Silver | **requested Ira Phillips and Pamela Silver | ||
**[http://hdl.handle.net/1721.1/32535 DSpace], [http://dspace.mit.edu/bitstream/handle/1721.1/32535/PhillipsSilverFusion.pdf?sequence=1 PDF] (direct link) | **Original technical report available at [http://hdl.handle.net/1721.1/32535 DSpace], [http://dspace.mit.edu/bitstream/handle/1721.1/32535/PhillipsSilverFusion.pdf?sequence=1 PDF] (direct link) | ||
* BBF RFC 24: Conversion of Freiburg (Fusion) Biobricks to the Silver (BioFusion) format | * BBF RFC 24: Conversion of Freiburg (Fusion) Biobricks to the Silver (BioFusion) format | ||
**requested by Raik Grünberg | **requested by Raik Grünberg | ||
Revision as of 11:19, 30 March 2009
|
RFCs An RFC might
RFC's are static documents or digital objects like video's intended to get an idea, proposed standard, or method out to the rest of the community for comment. RFC's are numbered, for ease of referencing, and the numbers are assigned by the BBF. Instructions for requesting a BBF RFC number, preparing an RFC, and submitting an RFC to the BBF are described in BBF RFC 0.
The complete list of all assigned RFC numbers and RFC documents (for those submitted) is listed below.
|
